PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG008396.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 729aa    MW: 82942.6 Da    PI: 6.0379
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG008396.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS161.85.6e-5010645010374
         GRAS  10 eavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleav 106
                  +a++ + l  a++lLa+++ las++    +++ a yf+eAL +r +r         pp + +      ++++        P+ kf+ +t   aI + +
  CCG008396.1 106 KAIEGDRLDVADSLLAEIQSLASKEEsIWTRKFAEYFAEALVRRAYRIR-------PPCAFP---LLPAASI------YEPFCKFAGITSKYAIADHA 187
                  68899999**************9999568999**************933.......444443...2222233......35***************987 PP

         GRAS 107 ege..ervHiiDfdisqG.lQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl..eleeLrvkp. 198
                   ++  +r+HiiDf+i      W +L+++L ++ +g  s+ iT +++  + sk++++  ++     A +++++     l++++ +d+   l++Lr k+ 
  CCG008396.1 188 LNSgnKRLHIIDFSIIFYfWLWNSLIKELKEQYGGLQSVLITSIAP--KLSKHAYHLRRNGVWPTAGNVELRQ----LTCNSPDDIvnCLSKLRRKSk 279
                  65555*********9765167*************************..4477777777777788888777652....233322222223699988888 PP

         GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                  +E ++V++ + lh+ll++++++e+    vL+ vk+l ++++v+veqea++ns+++ er+ +++++y  +f+sle+       +  ++ +++++r+i n
  CCG008396.1 280 DEIVVVSWNFTLHKLLAQDGAMEQ----VLSKVKDLGADIMVIVEQEANLNSPDLSERLEQSFQCYP-VFESLEKMC-----KFPVLWEMYFRRQIGN 367
                  ************************....*************************************96.8*****994.....666777888******* PP

         GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakq..aklllrkvk...sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  vvaceg +r+er e++++W++rl++aGF pvp + ++ k+   k+l + ++   ++++ +ee++g +vl  ++ p+ ++S+W+
  CCG008396.1 368 VVACEGVDRVERIESFAQWQNRLSRAGFYPVPQKADEFKEdlQKCLKEDYPpyyVEEFGIEEKEGHFVLLRHGFPVAAASVWK 450
                  *******************************98765544322677777764334899*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098526.77471425IPR005202Transcription factor GRAS
PfamPF035141.9E-47106450IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MQLSSSHQST MELRATGCKN SSESQVEQLF LTLSYRQIPL HLLHLQLLGK IQTYMEIKIV  60
NFGNSKVNLK VSIDGLGLSS RLSGSTKTVF TSSNVMDENF FVDPKKAIEG DRLDVADSLL  120
AEIQSLASKE ESIWTRKFAE YFAEALVRRA YRIRPPCAFP LLPAASIYEP FCKFAGITSK  180
YAIADHALNS GNKRLHIIDF SIIFYFWLWN SLIKELKEQY GGLQSVLITS IAPKLSKHAY  240
HLRRNGVWPT AGNVELRQLT CNSPDDIVNC LSKLRRKSKD EIVVVSWNFT LHKLLAQDGA  300
MEQVLSKVKD LGADIMVIVE QEANLNSPDL SERLEQSFQC YPVFESLEKM CKFPVLWEMY  360
FRRQIGNVVA CEGVDRVERI ESFAQWQNRL SRAGFYPVPQ KADEFKEDLQ KCLKEDYPPY  420
YVEEFGIEEK EGHFVLLRHG FPVAAASVWK VTDPPQFSGG HWKNMLTGLC TMQDTVDDSE  480
GMASSSESED DEENNSLVSI MAHRKSTQGS SMNRIAASAK LYDILEYICD LHELPLAVTR  540
ISYYQDGNTN SKGKRILCID DSACYVNDCN MDGFVDEYAR LRLEEGQGIA GKALQSNIHI  600
QHDISVLDPA EFPWDDYGII WDIRICHAAF AIRLTSNHPC KDDYVLEFVL PRFMKETSEV  660
ELLINKVLLT LQRKCLKLWK LGVRDINEAR LNATSIEAEE TRELLEQGQP GTAHLNWTLY  720
KNTGHKNQK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2139180.0AC213918.1 Populus trichocarpa clone ACSB2341-L13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011014362.10.0PREDICTED: uncharacterized protein LOC105118171
TrEMBLA0A3N7G5D10.0A0A3N7G5D1_POPTR; Uncharacterized protein
TrEMBLA0A3N7H1S70.0A0A3N7H1S7_POPTR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2062225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.13e-47GRAS family protein