PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG008396.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GRAS | ||||||||
Protein Properties | Length: 729aa MW: 82942.6 Da PI: 6.0379 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 161.8 | 5.6e-50 | 106 | 450 | 10 | 374 |
GRAS 10 eavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleav 106 +a++ + l a++lLa+++ las++ +++ a yf+eAL +r +r pp + + ++++ P+ kf+ +t aI + + CCG008396.1 106 KAIEGDRLDVADSLLAEIQSLASKEEsIWTRKFAEYFAEALVRRAYRIR-------PPCAFP---LLPAASI------YEPFCKFAGITSKYAIADHA 187 68899999**************9999568999**************933.......444443...2222233......35***************987 PP GRAS 107 ege..ervHiiDfdisqG.lQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl..eleeLrvkp. 198 ++ +r+HiiDf+i W +L+++L ++ +g s+ iT +++ + sk++++ ++ A +++++ l++++ +d+ l++Lr k+ CCG008396.1 188 LNSgnKRLHIIDFSIIFYfWLWNSLIKELKEQYGGLQSVLITSIAP--KLSKHAYHLRRNGVWPTAGNVELRQ----LTCNSPDDIvnCLSKLRRKSk 279 65555*********9765167*************************..4477777777777788888777652....233322222223699988888 PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 +E ++V++ + lh+ll++++++e+ vL+ vk+l ++++v+veqea++ns+++ er+ +++++y +f+sle+ + ++ +++++r+i n CCG008396.1 280 DEIVVVSWNFTLHKLLAQDGAMEQ----VLSKVKDLGADIMVIVEQEANLNSPDLSERLEQSFQCYP-VFESLEKMC-----KFPVLWEMYFRRQIGN 367 ************************....*************************************96.8*****994.....666777888******* PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakq..aklllrkvk...sdgyrveeesgslvlgWkdrpLvsvSaWr 374 vvaceg +r+er e++++W++rl++aGF pvp + ++ k+ k+l + ++ ++++ +ee++g +vl ++ p+ ++S+W+ CCG008396.1 368 VVACEGVDRVERIESFAQWQNRLSRAGFYPVPQKADEFKEdlQKCLKEDYPpyyVEEFGIEEKEGHFVLLRHGFPVAAASVWK 450 *******************************98765544322677777764334899*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 26.774 | 71 | 425 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.9E-47 | 106 | 450 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 729 aa Download sequence Send to blast |
MQLSSSHQST MELRATGCKN SSESQVEQLF LTLSYRQIPL HLLHLQLLGK IQTYMEIKIV 60 NFGNSKVNLK VSIDGLGLSS RLSGSTKTVF TSSNVMDENF FVDPKKAIEG DRLDVADSLL 120 AEIQSLASKE ESIWTRKFAE YFAEALVRRA YRIRPPCAFP LLPAASIYEP FCKFAGITSK 180 YAIADHALNS GNKRLHIIDF SIIFYFWLWN SLIKELKEQY GGLQSVLITS IAPKLSKHAY 240 HLRRNGVWPT AGNVELRQLT CNSPDDIVNC LSKLRRKSKD EIVVVSWNFT LHKLLAQDGA 300 MEQVLSKVKD LGADIMVIVE QEANLNSPDL SERLEQSFQC YPVFESLEKM CKFPVLWEMY 360 FRRQIGNVVA CEGVDRVERI ESFAQWQNRL SRAGFYPVPQ KADEFKEDLQ KCLKEDYPPY 420 YVEEFGIEEK EGHFVLLRHG FPVAAASVWK VTDPPQFSGG HWKNMLTGLC TMQDTVDDSE 480 GMASSSESED DEENNSLVSI MAHRKSTQGS SMNRIAASAK LYDILEYICD LHELPLAVTR 540 ISYYQDGNTN SKGKRILCID DSACYVNDCN MDGFVDEYAR LRLEEGQGIA GKALQSNIHI 600 QHDISVLDPA EFPWDDYGII WDIRICHAAF AIRLTSNHPC KDDYVLEFVL PRFMKETSEV 660 ELLINKVLLT LQRKCLKLWK LGVRDINEAR LNATSIEAEE TRELLEQGQP GTAHLNWTLY 720 KNTGHKNQK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC213918 | 0.0 | AC213918.1 Populus trichocarpa clone ACSB2341-L13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011014362.1 | 0.0 | PREDICTED: uncharacterized protein LOC105118171 | ||||
TrEMBL | A0A3N7G5D1 | 0.0 | A0A3N7G5D1_POPTR; Uncharacterized protein | ||||
TrEMBL | A0A3N7H1S7 | 0.0 | A0A3N7H1S7_POPTR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF20622 | 2 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01570.1 | 3e-47 | GRAS family protein |