PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG008342.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 91aa    MW: 10471.9 Da    PI: 9.3331
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG008342.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61e-0822591754
                 HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH 17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                  +   +L++llP+ + + +s K+s a iL+++++YIksL
  CCG008342.1 22 LDLVTKLQQLLPEiR-NRRSDKVSAAKILQETCNYIKSL 59
                 566679*******77.89********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.1E-9379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.204559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.16E-91977IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-62159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MSSRRSRSRQ SSSSRISDDQ ILDLVTKLQQ LLPEIRNRRS DKVSAAKILQ ETCNYIKSLH  60
REVDDLSERL SELLETTDTA QAAIIRNLLM Q
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. Regulates light responses by binding and inhibiting the activity of the bHLH transcription factor HFR1, a critical regulator of light signaling and shade avoidance. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868, ECO:0000269|PubMed:20305124}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by exogenous gibberellin. {ECO:0000269|PubMed:16527868}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2167647e-75AC216764.1 Populus trichocarpa clone POP014-L21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011044025.14e-57PREDICTED: transcription factor PRE3-like
SwissprotF4JCN91e-37PRE4_ARATH; Transcription factor PRE4
TrEMBLB9I2Z76e-55B9I2Z7_POPTR; Uncharacterized protein
STRINGPOPTR_0012s07130.11e-55(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74500.12e-22activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]