PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG008317.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GRAS

Protein Properties

Length: 420aa MW: 47783.7 Da PI: 7.3659

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG008317.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	402.4	4.6e-123	27	419	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarl.selaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaal............kl. 83 +++lL++cA+ +s++d+++aq+l ++l s ++sp+gd+++Rl+ f++AL+ rl+r s+++ + l s+ ++n+ +++++ ++ CCG008317.1 27 MRQLLVSCADLISQSDFSAAQRLFSHLlSSNSSPYGDSTERLVRQFVRALSFRLNRhSTPTSTAPLDFSPPCTTNTNNKMMMIsyestdqetlrsCYl 124 589*******************9972666*********************666666666655555544433333333334555544444116 PP GRAS 84 .fsevsPilkfshltaNqaIleave.geervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvp 175 +++++P+++f+hltaNqaIlea++ g++++HiiDfdi++G+QWp+L+qaLa+R+ ++pp+lRiTg g+ + + l++tg+rL kfA++lg+ CCG008317.1 125 sLNQITPFIRFCHLTANQAILEAIQvGQQAIHIIDFDIMHGVQWPPLMQALADRSnntlHPPPMLRITGTGH----DLNILQRTGDRLLKFAHSLGLG 218 7*******************94669**********************777777*******....9***************** PP GRAS 176 fefnvl...vak.rledl.eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 f+f++l + ++ +l ++++ + p+EalaVn+vl lhr+l+++ +L+ +k l+Pkvv+v+e+ea+hn++ Fl+rfleal++y+alf CCG008317.1 219 FQFHPLlllNNDpTFLALhLPSAITLLPDEALAVNCVLYLHRFLKDDSREL---LLFLHKIKALNPKVVTVAEREASHNNPLFLQRFLEALDHYTALF 313 *97642223343442578899999************6555444...59************************************** PP GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdr 365 dslea+lp++++er vE+ ++grei+++va+eg+ rrerh+++e+W++ l+++GF++vpls +a +qaklllr ++ s+gy++ ++s++lgW+++ CCG008317.1 314 DSLEATLPPNNRERLAVEQIWFGREIMDIVAAEGEVRRERHQRFETWEMLLKSVGFSSVPLSPFALSQAKLLLRLHYpSEGYQLRILNNSFFLGWQNH 411 ********************************************************************************************** PP GRAS 366 pLvsvSaW 373 +L+svS+W CCG008317.1 412 SLFSVSSW 419 ****** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.408	1	399	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.6E-120	27	419	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010223	Biological Process	secondary shoot formation

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MMSSSNNSRD HPDQVKGIPP PSTAFHMRQL LVSCADLISQ SDFSAAQRLF SHLLSSNSSP 60 YGDSTERLVR QFVRALSFRL NRHSTPTSTA PLDFSPPCTT NTNNKMMMIS YESTDQETLR 120 SCYLSLNQIT PFIRFCHLTA NQAILEAIQV GQQAIHIIDF DIMHGVQWPP LMQALADRSN 180 NTLHPPPMLR ITGTGHDLNI LQRTGDRLLK FAHSLGLGFQ FHPLLLLNND PTFLALHLPS 240 AITLLPDEAL AVNCVLYLHR FLKDDSRELL LFLHKIKALN PKVVTVAERE ASHNNPLFLQ 300 RFLEALDHYT ALFDSLEATL PPNNRERLAV EQIWFGREIM DIVAAEGEVR RERHQRFETW 360 EMLLKSVGFS SVPLSPFALS QAKLLLRLHY PSEGYQLRIL NNSFFLGWQN HSLFSVSSWH

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MMSSSNNSRD HPDQVKGIPP PSTAFHMRQL LVSCADLISQ SDFSAAQRLF SHLLSSNSSP  60
YGDSTERLVR QFVRALSFRL NRHSTPTSTA PLDFSPPCTT NTNNKMMMIS YESTDQETLR  120
SCYLSLNQIT PFIRFCHLTA NQAILEAIQV GQQAIHIIDF DIMHGVQWPP LMQALADRSN  180
NTLHPPPMLR ITGTGHDLNI LQRTGDRLLK FAHSLGLGFQ FHPLLLLNND PTFLALHLPS  240
AITLLPDEAL AVNCVLYLHR FLKDDSRELL LFLHKIKALN PKVVTVAERE ASHNNPLFLQ  300
RFLEALDHYT ALFDSLEATL PPNNRERLAV EQIWFGREIM DIVAAEGEVR RERHQRFETW  360
EMLLKSVGFS SVPLSPFALS QAKLLLRLHY PSEGYQLRIL NNSFFLGWQN HSLFSVSSWH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-61	34	419	26	378	Protein SCARECROW
5b3h_A	2e-61	34	419	25	377	Protein SCARECROW
5b3h_D	2e-61	34	419	25	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269\|PubMed:12730136}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC209044	0.0	AC209044.1 Populus trichocarpa clone POP057-J01, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011000401.1	0.0	PREDICTED: scarecrow-like protein 18
Swissprot	Q9ZWC5	1e-137	SCL18_ARATH; Scarecrow-like protein 18
TrEMBL	B9I203	0.0	B9I203_POPTR; Uncharacterized protein
STRING	POPTR_0012s02710.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12926	21	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	1e-139	GRAS family protein

Publications ? help Back to Top
Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]