PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG008253.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 245aa MW: 27727.3 Da PI: 7.7469 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.9 | 5.4e-14 | 8 | 59 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48 +g+WT+ Ed ll++ v+++G ++W+ Ia+ g t+k+c++rw +yl CCG008253.1 8 KGPWTEKEDILLINFVHLFGDRRWDFIAKVSGlkvaGDTTGKSCRLRWVNYL 59 79**********************************899***********97 PP | |||||||
2 | Myb_DNA-binding | 55.5 | 1.4e-17 | 65 | 110 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+ l +++++++G++ W++Iar+++ gRt++++k++w++++ CCG008253.1 65 RGKMTPQEERLVLELHAKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 110 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.928 | 3 | 59 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.94E-27 | 6 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-12 | 7 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-13 | 8 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-18 | 9 | 66 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.70E-10 | 10 | 59 | No hit | No description |
PROSITE profile | PS51294 | 27.508 | 60 | 114 | IPR017930 | Myb domain |
SMART | SM00717 | 4.4E-17 | 64 | 112 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.1E-16 | 65 | 109 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-24 | 67 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.65E-12 | 67 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MMQDEIRKGP WTEKEDILLI NFVHLFGDRR WDFIAKVSGL KVAGDTTGKS CRLRWVNYLH 60 PGLKRGKMTP QEERLVLELH AKWGNRWSRI ARKLPGRTDN EIKNYWRTHM RKKAQERKRA 120 MSPSLSSSNC SSSSNTTTVN SSPLPRTGET SFYDTGGLEQ VVLAGKNGEA VQGGEKGYSM 180 DDIWKDIENT IEPVCDGFSE KGCNCYCPSL ASPSWDYCPD TLWSFGEEEG KIFLPYDDGT 240 TILTG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-27 | 5 | 114 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 6e-27 | 1 | 114 | 51 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 6e-27 | 1 | 114 | 51 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034651 | 9e-46 | KM034651.1 Jatropha curcas clone JcMYB031 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011000301.1 | 1e-160 | PREDICTED: transcription factor MYB59 isoform X2 | ||||
Swissprot | Q9LX82 | 8e-93 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | B9GES4 | 1e-150 | B9GES4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s24220.1 | 1e-151 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4378 | 33 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.1 | 6e-92 | myb domain protein 48 |
Publications ? help Back to Top | |||
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