PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG008229.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Dof

Protein Properties

Length: 323aa MW: 34615.5 Da PI: 9.7162

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG008229.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.4	6.5e-38	68	128	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e alkcprC+stntkfCy+nny+lsqPr+fCk+CrryWt+GGalr vPvGgg+r+nkk++ CCG008229.1 68 PEVALKCPRCESTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKKRK 128 56789*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-34	52	121	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.5E-32	71	126	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.376	72	126	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	74	110	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MVFSSVPFYL DPPNWQQQQP SQQPGASNES PQLPPLPPPA HVGGSGTAGS IRPGSMADRA 60 RLAKIPQPEV ALKCPRCEST NTKFCYFNNY NLSQPRHFCK TCRRYWTRGG ALRSVPVGGG 120 CRRNKKRKVQ SSSKSPVSSE RQVGSTSSST SALPSQVIGH LPQQQSQLPY MTSLHNLAQF 180 GEGNIGLNFG GIQGQLGSTS GASEQTDMGF QIGSNSGMNS SAILSAGGVH QFPFFEFSPS 240 GLYPLQSEGA ETPISVNGDN QLQSMTSSSR VSQLGPVKTE GNQGLNLSKP YLGVPQNNQY 300 YWSGNTWADL SGLNSSSTSH LLR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	121	127	RRNKKRK

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00281	DAP	Transfer from AT2G28810	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011000262.1	0.0	PREDICTED: dof zinc finger protein DOF2.2-like isoform X1
TrEMBL	A0A2K2C2N4	0.0	A0A2K2C2N4_POPTR; Uncharacterized protein
TrEMBL	A0A3S9LK65	0.0	A0A3S9LK65_POPTO; Dof-type zinc finger DNA-binding family protein
STRING	POPTR_0001s24540.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28810.2	2e-45	Dof family protein