PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG008014.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 443aa    MW: 48761.4 Da    PI: 7.2905
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG008014.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B399.71.8e-31110214199
                  EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 
                  f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed +g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + +l
  CCG008014.1 110 FDKVVTPSDVGKLNRLVIPKQHAEKYlpldSSSNEKGLLLNFEDMNGKAWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGiGDlGKDRL 207
                  89****************************66677899*************************************************6559999999* PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  ++ ++r+
  CCG008014.1 208 YINWRRR 214
                  ***9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-40102217IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-29107198IPR015300DNA-binding pseudobarrel domain
CDDcd100174.31E-26108197No hitNo description
PROSITE profilePS5086314.819110215IPR003340B3 DNA binding domain
SMARTSM010193.2E-21110215IPR003340B3 DNA binding domain
PfamPF023625.7E-29110214IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MEFGTGFSEG DQMSRGKGLP FPSYSSSNSS PSSSSSQQRN QLVLGQIYEN HQMGSWLGNK  60
YDLVDQDTSR FNESVAVNAA ELDLMDVNDE EEGGRGESSS VQVIEKEHMF DKVVTPSDVG  120
KLNRLVIPKQ HAEKYLPLDS SSNEKGLLLN FEDMNGKAWR FRYSYWNSSQ SYVMTKGWSR  180
FVKEKKLDAG DIVSFQRGIG DLGKDRLYIN WRRRPDAPDD PSRHQHHFHN HHFSAIPWSP  240
LLMRPPTVPV LPRDHLHLSN PNRNTCYKVG GSSYGYGNYS NVVNPCSSSG SVFYMTSSAG  300
AAAALEAAPQ QVGMGIVQWQ LGGGGVVEPV VYESVPVVQG KAAAKRLRLF GVNMDCPITD  360
QSDDYGHKFS STTAAAATLP HNATIALQPT PQLSSQSLQH PLHQLRLYRG TPVAAMPTST  420
TQFLHKGKSS SPSSSSMSLD LDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A7e-661052153114B3 domain-containing transcription factor NGA1
5os9_B7e-661052153114B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1519550.0AC151955.2 Populus trichocarpa clone Pop1-041G20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011038019.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
SwissprotO827991e-76NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLU5GXP90.0U5GXP9_POPTR; Uncharacterized protein
STRINGPOPTR_0001s45650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.16e-63B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]