PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG007979.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 525aa MW: 57589.6 Da PI: 8.7776

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG007979.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.6	2.5e-06	72	94	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F+r nL+ H r H CCG007979.1 72 FICEICNKGFKRDQNLQLHRRGH 94 89*******************88 PP
2	zf-C2H2	12.5	0.00044	148	170	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + CCG007979.1 148 WKCEKCSKRYAVQSDWKAHSKIC 170 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.44E-7	71	94	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.3E-6	71	94	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.866	72	94	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.011	72	94	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	2.0E-5	72	94	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	74	94	IPR007087	Zinc finger, C2H2
SMART	SM00355	100	113	143	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	8.0E-5	136	169	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.44E-7	143	168	No hit	No description
SMART	SM00355	130	148	168	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence Send to blast
MDENMSNLTS ASGEVSASSG SRIETGAIYP QHSFDSTNQP PPKKKKSFPG NPDPDAEVIA 60 LSPNSLQATN RFICEICNKG FKRDQNLQLH RRGHNLPWKL KQRTNKEVKK KVYVCPEVTC 120 VHHDPSRALG DLTGIKKHFS RKHGEKKWKC EKCSKRYAVQ SDWKAHSKIC GTREYRCNCG 180 TLFSRQVQYT IQRDSFITHR AFCDALAEES VRAITVNPIL SSQQPGSSAS HLINLQALSV 240 KREEDQNQHH FNPRPEYNIP PWLVYPPIGD AGTGPPQINL SSQLFPENFN QSFLQHGNPS 300 TNPTVLPSFQ SASTVSPHMS ATALLQKAAQ MGVTMSKPSP PAAAAILRPH QGHMSNLNPG 360 FSSTLPAVTS GLFLSSREEM GSGCGHGLVS LENKAAAVTS GIMEHLAASD AGGPSLVHDM 420 MSSLSSASGF DGSSFDNEDF NGMLNPKRDG CNFQEILLKS TESQFRRSDH DVRTSAVGSP 480 RGGGNDDLTR DFLGLKALTH KDWLDHIKPS TYGQRNQNLP PPWQG

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence Send to blast

MDENMSNLTS ASGEVSASSG SRIETGAIYP QHSFDSTNQP PPKKKKSFPG NPDPDAEVIA  60
LSPNSLQATN RFICEICNKG FKRDQNLQLH RRGHNLPWKL KQRTNKEVKK KVYVCPEVTC  120
VHHDPSRALG DLTGIKKHFS RKHGEKKWKC EKCSKRYAVQ SDWKAHSKIC GTREYRCNCG  180
TLFSRQVQYT IQRDSFITHR AFCDALAEES VRAITVNPIL SSQQPGSSAS HLINLQALSV  240
KREEDQNQHH FNPRPEYNIP PWLVYPPIGD AGTGPPQINL SSQLFPENFN QSFLQHGNPS  300
TNPTVLPSFQ SASTVSPHMS ATALLQKAAQ MGVTMSKPSP PAAAAILRPH QGHMSNLNPG  360
FSSTLPAVTS GLFLSSREEM GSGCGHGLVS LENKAAAVTS GIMEHLAASD AGGPSLVHDM  420
MSSLSSASGF DGSSFDNEDF NGMLNPKRDG CNFQEILLKS TESQFRRSDH DVRTSAVGSP  480
RGGGNDDLTR DFLGLKALTH KDWLDHIKPS TYGQRNQNLP PPWQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	5e-31	144	212	3	64	Zinc finger protein JACKDAW
5b3h_F	5e-31	144	212	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011014257.1	0.0	PREDICTED: zinc finger protein NUTCRACKER-like
Swissprot	Q8H1F5	1e-115	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A3N7G688	0.0	A0A3N7G688_POPTR; Uncharacterized protein
STRING	POPTR_0018s05280.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-110	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]