PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG007964.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | TCP | ||||||||
Protein Properties | Length: 414aa MW: 45321 Da PI: 6.9719 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 114.7 | 1.2e-35 | 35 | 155 | 2 | 103 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaesssssasnsssg 88 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak++i+el+++ + +++++ s+++++++ CCG007964.1 35 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKASIDELAKLpawdpttagfnP------TTSKTTTRSTQQQNIS 126 79**************************************************************666654443221......2333344444444444 PP TCP 89 ..............kaaksaakskksqks 103 ++a++a + ++ q++ CCG007964.1 127 dereyqlsmenvaaSKAAAAIEVQNMQQQ 155 34445555555543222222222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.5E-34 | 35 | 155 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.877 | 37 | 95 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MGESHHQAAT SSRLGIRNTV GEIVEVQGGH IVRSTGRKDR HSKVCTAKGP RDRRVRLSAH 60 TAIQFYDVQD RLGYDRPSKA VDWLIKKAKA SIDELAKLPA WDPTTAGFNP TTSKTTTRST 120 QQQNISDERE YQLSMENVAA SKAAAAIEVQ NMQQQMAENP NCSSGFLPPS LDSDAIADTI 180 KTFFPMGAST ETSSPTIQFQ NYPPDLMSRT SSQSQDLRLS LQSFQEPILL QHQAHHHGHQ 240 AQNEHQVLFS GTTAHYLGLD GSSSGWSEQH HAPEINRFQR NLVAWNAAGG GGGGVGGGGF 300 FLNTPLPPLQ TMSPSPLIQP FFGQNQFFSQ RGPLQSSNTP SVRAWIDPAI TPDHHEQQQI 360 PQIYHQQTAI SGIGFTASGG EFYGFRVPAR IQGEDEEHDG IHNKPSSASS DSRH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-20 | 42 | 95 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 2e-20 | 42 | 95 | 1 | 54 | Putative transcription factor PCF6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011000248.1 | 0.0 | PREDICTED: transcription factor TCP4-like | ||||
Swissprot | Q8LPR5 | 1e-106 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A2K2CA04 | 0.0 | A0A2K2CA04_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s38480.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 2e-93 | TCP family protein |