PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG007912.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 392aa MW: 42109.9 Da PI: 8.5767

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG007912.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.1	2.5e-11	275	320	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L++l+P+ +k s a++Le+Av++Ik Lq CCG007912.1 275 SIAERERRTRISGKLKTLQDLVPNM----DKQTSYADMLELAVKHIKGLQ 320 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.075	269	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-13	272	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.11E-11	273	324	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.6E-11	274	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-12	275	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.8E-9	275	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MYPQPSSSSS SPQKSNLPSG LTRYGSAPGS FLTRAVDSVI GADRELSGLG STPLVGRQQH 60 FSGDSSSITS ESTCKVNPSS CDRKAPKSGG GGGLQRSYGL NEIAHGAGSL VRQRSSPAGF 120 LSHLATENGG FSITRGTGGY NSRNGSGGGP SRLKSQLSFT RQDSLSQISE VSENVVEGIG 180 SDNGSQNSTH SYSAASFGME SWDTTNSIVF SGHPSKQART GDGDIYNCFN ALETQFSLPQ 240 TSLEIATVEK LLQIPEDSVP CKIRAKRGCA THPRSIAERE RRTRISGKLK TLQDLVPNMD 300 KQTSYADMLE LAVKHIKGLQ NEVESSTVNV LSRRLKFIIL WFGINFVPCV TRFDFETSPL 360 THDNQVAGAL YRLEVLAGLI ASVHLDQIWW IG

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MYPQPSSSSS SPQKSNLPSG LTRYGSAPGS FLTRAVDSVI GADRELSGLG STPLVGRQQH  60
FSGDSSSITS ESTCKVNPSS CDRKAPKSGG GGGLQRSYGL NEIAHGAGSL VRQRSSPAGF  120
LSHLATENGG FSITRGTGGY NSRNGSGGGP SRLKSQLSFT RQDSLSQISE VSENVVEGIG  180
SDNGSQNSTH SYSAASFGME SWDTTNSIVF SGHPSKQART GDGDIYNCFN ALETQFSLPQ  240
TSLEIATVEK LLQIPEDSVP CKIRAKRGCA THPRSIAERE RRTRISGKLK TLQDLVPNMD  300
KQTSYADMLE LAVKHIKGLQ NEVESSTVNV LSRRLKFIIL WFGINFVPCV TRFDFETSPL  360
THDNQVAGAL YRLEVLAGLI ASVHLDQIWW IG

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF147017	0.0	EF147017.1 Populus trichocarpa clone WS01226_D10 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010999991.1	0.0	PREDICTED: transcription factor bHLH128-like
Refseq	XP_011015174.1	0.0	PREDICTED: transcription factor bHLH128-like
Swissprot	Q8H102	3e-81	BH128_ARATH; Transcription factor bHLH128
TrEMBL	B9IAD1	0.0	B9IAD1_POPTR; Uncharacterized protein
STRING	cassava4.1_010743m	1e-157	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7680	31	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	5e-74	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]