PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG007876.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

CPP

Protein Properties

Length: 794aa MW: 86718.2 Da PI: 6.1836

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG007876.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	31.2	4.4e-10	508	534	14	40
TCR 14 lkkYCeCfaagkkCseeCkCedCkNke 40 l++YCeCfaag++C e C C+dC+Nk CCG007876.1 508 LQLYCECFAAGVYCIEPCACQDCFNKP 534 789**********************96 PP
2	TCR	50.6	3.9e-16	581	619	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN CCG007876.1 581 RHKRGCNCKKSTCLKKYCECYQGGVGCSINCRCEGCKNV 619 589***********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	32.669	498	621	IPR005172	CRC domain
SMART	SM01114	3.3E-5	503	536	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.2E-6	508	533	IPR005172	CRC domain
SMART	SM01114	2.8E-18	581	622	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.2E-11	583	618	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 794 aa Download sequence Send to blast
MLELWGCLMA IIYGGLEGCD LRELRVLCGA ASSLAMDTPE KTQITATLSK FEDSPVFNYI 60 NSLSPIKPVK SINIAQTFHS LSFASLPSVF TSPHVSSHKE TRFLKRHNYS DLSKPESSSG 120 NGNEVCKDEG VVVDAAQLYH NSAELHENFD PGMSIGESSV EPPSEHLKFA IELPQTLKYG 180 WGRPGGKYGC GSPDGRYGTQ TDMVSESAGT SLSLVPFANG TSHKSSLEGQ VHPAGLYKIE 240 SKKEATECDW ESLISDAADL LIFNSPIDAD GFKELFQKSP NPVVGFCTSF NELHKTQIVN 300 PFGSGEQNEM GDPSTQPGET IELTQMDPTQ DNLAANEDPN KYMTSNASKA VSNLHRGMRR 360 RCLDFEKVGS RRKNIDDGSS SSSVLVQLDE KTTPKNTPLV PVKPGGDSSR CILPGIGLHL 420 NALAINSKDS NKIKLETFSS SITLPGSADS FNSRTTDQEL DESLTLVSSE RDNDPNENAV 480 PLVEDFSQTS PKKKRHVLWL YISCLQALQL YCECFAAGVY CIEPCACQDC FNKPIHEDTV 540 LATRKQIESR NPLAFAPKVI RSSESAPEIR DESIKTPASA RHKRGCNCKK STCLKKYCEC 600 YQGGVGCSIN CRCEGCKNVF GRKDDFPNSG AASMEMEDEP EDETDASVKN GVDKILQKTE 660 LQNNDEQNPN SALPTTPLRF CRPLVQFSSK GKPPRSFLGV GSSCGLYTGQ RNGKPNILRP 720 QSKFEKQCQN VPDDDIPEIL RENHSPSSGI KTSSPNSKRV SPPQNNFGSS PGPRSGRKLI 780 LQSIPSFPSL TPQH

Sequence ? help Back to Top

Protein Sequence Length: 794 aa Download sequence Send to blast

MLELWGCLMA IIYGGLEGCD LRELRVLCGA ASSLAMDTPE KTQITATLSK FEDSPVFNYI  60
NSLSPIKPVK SINIAQTFHS LSFASLPSVF TSPHVSSHKE TRFLKRHNYS DLSKPESSSG  120
NGNEVCKDEG VVVDAAQLYH NSAELHENFD PGMSIGESSV EPPSEHLKFA IELPQTLKYG  180
WGRPGGKYGC GSPDGRYGTQ TDMVSESAGT SLSLVPFANG TSHKSSLEGQ VHPAGLYKIE  240
SKKEATECDW ESLISDAADL LIFNSPIDAD GFKELFQKSP NPVVGFCTSF NELHKTQIVN  300
PFGSGEQNEM GDPSTQPGET IELTQMDPTQ DNLAANEDPN KYMTSNASKA VSNLHRGMRR  360
RCLDFEKVGS RRKNIDDGSS SSSVLVQLDE KTTPKNTPLV PVKPGGDSSR CILPGIGLHL  420
NALAINSKDS NKIKLETFSS SITLPGSADS FNSRTTDQEL DESLTLVSSE RDNDPNENAV  480
PLVEDFSQTS PKKKRHVLWL YISCLQALQL YCECFAAGVY CIEPCACQDC FNKPIHEDTV  540
LATRKQIESR NPLAFAPKVI RSSESAPEIR DESIKTPASA RHKRGCNCKK STCLKKYCEC  600
YQGGVGCSIN CRCEGCKNVF GRKDDFPNSG AASMEMEDEP EDETDASVKN GVDKILQKTE  660
LQNNDEQNPN SALPTTPLRF CRPLVQFSSK GKPPRSFLGV GSSCGLYTGQ RNGKPNILRP  720
QSKFEKQCQN VPDDDIPEIL RENHSPSSGI KTSSPNSKRV SPPQNNFGSS PGPRSGRKLI  780
LQSIPSFPSL TPQH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	5e-13	507	619	21	121	Protein lin-54 homolog
5fd3_B	5e-13	507	619	21	121	Protein lin-54 homolog
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC217586	1e-142	AC217586.1 Populus trichocarpa clone POP025-M11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011030648.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X1
TrEMBL	B9HUS4	0.0	B9HUS4_POPTR; Uncharacterized protein
STRING	POPTR_0010s09350.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2619	33	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	1e-151	TESMIN/TSO1-like CXC 2