PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG007863.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 358aa    MW: 41354.2 Da    PI: 4.8941
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG007863.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.85.6e-36441352102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y+i+ed++++++isws+ +nsfvv+d++ f+ ++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++++
   CCG007863.1  44 FLTKTYDIIEDSSTNHIISWSRGNNSFVVWDPQAFSISLLPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKTVR 131
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   CCG007863.1 132 RRKA 135
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.5E-3938128IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.7E-6040133IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.24E-3540133IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.6E-3144133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-194467IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-198294IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434083107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-1995107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MNHRGRPIKE EYAGGSSSTY SSGIASTSIP QPMEGLHDPG PPPFLTKTYD IIEDSSTNHI  60
ISWSRGNNSF VVWDPQAFSI SLLPRYFKHN NFSSFVRQLN TYGFRKVDPD RWEFANEGFL  120
RGQKHLLKTV RRRKAPQTQT SQQALEACVE DGTFRLDGEV DRLSRDKRAL MVELVKLRQQ  180
QQATRACLQL MEQRIIRNEN KQQHMMSFLA RAMQNPTFVQ QLVQQKDMMK ELEEEISKKK  240
RRPIDQGRSN VEVGEFGHGE GVGTFVKIEP REFGGFSEFE VPEFDNLAMN MQELNENQLI  300
NLHEECIEKG DEYENNGKDF DEAFWEDLLN EFIGEQGEDE EDVNVLVEQL GYLGYSPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-23211334129Heat shock factor protein 1
5d5v_B1e-23211334129Heat shock factor protein 1
5d5v_D1e-23211334129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127133KTVRRRK
2237241KKKRR
3237242KKKRRP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0139850.0KP013985.1 Populus simonii heat shock transcription factor A6b1 (HsfA6b1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011030629.10.0PREDICTED: heat stress transcription factor A-6b
SwissprotQ9LUH81e-134HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLB9HUR10.0B9HUR1_POPTR; Uncharacterized protein
STRINGPOPTR_0010s09210.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-131heat shock transcription factor A6B