PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG007786.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 148aa    MW: 16841.6 Da    PI: 5.4401
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG007786.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-201970256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 +y+GVr+++ +g+++AeIrdps +g  +r +lg+f taeeAa+a+++a+ +++g+
  CCG007786.1 19 RYRGVRRRP-WGKFAAEIRDPSRQG--ARLWLGTFETAEEAARAYDRAAFSMRGH 70
                 6********.**********96543..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.5E-371983IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-321978IPR001471AP2/ERF domain
PROSITE profilePS5103224.8691977IPR001471AP2/ERF domain
PfamPF008472.4E-151970IPR001471AP2/ERF domain
CDDcd000182.00E-291979No hitNo description
SuperFamilySSF541711.05E-231978IPR016177DNA-binding domain
PRINTSPR003671.2E-112031IPR001471AP2/ERF domain
PRINTSPR003671.2E-114359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MEEPDKGKEK ELKGREEVRY RGVRRRPWGK FAAEIRDPSR QGARLWLGTF ETAEEAARAY  60
DRAAFSMRGH LAILNFPNDY LSQVIGSSPR RPPVSSSSSD VGASDSFQRG SSSSDGQGKQ  120
VIEFEYLDDK ILEELLETEE EKKKRQQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-33141319114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011030513.11e-104PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC51e-48ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLB9HU983e-77B9HU98_POPTR; Uncharacterized protein
STRINGPOPTR_0010s08310.15e-78(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-23ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]