PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG007701.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | TCP | ||||||||
Protein Properties | Length: 363aa MW: 40387.2 Da PI: 7.9886 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 97.1 | 3.3e-30 | 48 | 149 | 2 | 66 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................................. 65 g+kdrhsk++T +g+RdRRvRls+ +a++++dLqd+LG+ ++sk ++WLl++ak+ i+el+ + CCG007701.1 48 FGGKDRHSKVCTIRGLRDRRVRLSVATAIQLYDLQDRLGLNQPSKVVDWLLNAAKHDIDELPPLpvlvpgnfslnhqamlgssqfgkevfkmsnninw 145 689*************************************************************7766665555544444444444444433333333 PP TCP 66 ...s 66 s CCG007701.1 146 edpS 149 3220 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 30.834 | 50 | 108 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.1E-28 | 50 | 174 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MITSSKEVDC PPKKEGGTND GKISKASSSS APWLRLKDPR IVRVSRAFGG KDRHSKVCTI 60 RGLRDRRVRL SVATAIQLYD LQDRLGLNQP SKVVDWLLNA AKHDIDELPP LPVLVPGNFS 120 LNHQAMLGSS QFGKEVFKMS NNINWEDPSA FPRPNLWNAG AFCRAKSKEV VMDPVNEKEN 180 WTKRIEEDKQ DSNIEGNSTA QVSSSSFLHR ASHSSLPSLI NNAMPYGSFF HLEPPNFPLS 240 DHMENHGFST QTGDIHNLNA VPLSSALSLS SGSQFFVCPP GTTQSYFPSH VTASMENDPR 300 QINHFQVLTP STQNLFPNSL TPSPYHESQP MKPSHYFRAT PSRLHSDQNS ESPPDKDPEF 360 PCK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-18 | 55 | 109 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-18 | 55 | 109 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011000070.1 | 0.0 | PREDICTED: transcription factor TCP13-like | ||||
TrEMBL | B9IK87 | 0.0 | B9IK87_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0017s13050.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 3e-47 | plastid transcription factor 1 |