PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG007692.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | LSD | ||||||||
Protein Properties | Length: 148aa MW: 15725.3 Da PI: 7.937 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 42.2 | 1.3e-13 | 44 | 68 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V CCG007692.1 44 CSGCRNLLLYPVGATSVCCAVCNAV 68 ************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.0E-12 | 41 | 71 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.5E-10 | 44 | 68 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MPVPLAPYPT TPAPYAPPAP APAPPPPPPP PLPPANGAQS QLVCSGCRNL LLYPVGATSV 60 CCAVCNAVTA VPPPVGLRRL PHLTDVHPWS NERAVFLLSY SQSSLGGKSS GTRQLWELQD 120 AVDVPIWSTV CEMCCLHFCH TSWGLIKR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU232247 | 1e-120 | CU232247.1 Populus EST from mild drought-stressed leaves. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011014158.1 | 6e-41 | PREDICTED: protein LOL1-like | ||||
Refseq | XP_011014159.1 | 6e-41 | PREDICTED: protein LOL1-like | ||||
Refseq | XP_011014160.1 | 6e-41 | PREDICTED: protein LOL1-like | ||||
Refseq | XP_011014161.1 | 6e-41 | PREDICTED: protein LOL1-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF28118 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 9e-08 | lsd one like 1 |