PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG007532.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 554aa    MW: 62484 Da    PI: 6.5681
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG007532.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS311.32.2e-951785472374
         GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  ++ L+++A++++s++l+laq +L+rls++ +sp+g+p+qR+a++f+eAL+  l++   ++  + +p   s++n++++++a+k f+ +sPi+ f+ +t+
  CCG007532.1 178 IRELIKAADCFDSNELQLAQVILERLSHRlQSPNGKPLQRAAFFFKEALQCLLTS--GSTRPQTNPVFPSWSNTVQTIKAYKDFFSISPIPMFTDFTT 273
                  678*************************99************************9..33334445555556779************************ PP

         GRAS  99 NqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpeg.....ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                  NqaIl++++g+   +H+iDfdi+ G ++++L+++L +++++     +p lRiT+v+ +  +  +e++ ++erL++fA el+++f+ ++++  ++e+l+
  CCG007532.1 274 NQAILDSLNGNsVFLHVIDFDIGFGCHYASLMRELVDKADScnkitTPLLRITAVVTE--DTVTETKLIKERLSQFAYELKIRFHVEFVLFPTFEMLS 369
                  ***********5667***********************944445669**********5..59999************************999****** PP

         GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...sFlerflealeyysalfdsl.eaklpreseerik 284
                  ++++++ +gE++aV l+  ++r l ++ ++    + +++ ++++sP vv++v++e  ++s+   sF + f+++le+ys++f+sl +a + + +++++k
  CCG007532.1 370 FKAIKFVEGEKIAVLLSPTIFRHLGSTNKV----TMFVNDFRRVSPSVVIFVDSEGWTESGarlSFRRNFVNCLEFYSMMFESLdAAVITAGDDWARK 463
                  ************************555555....55*******************7664444559*******************666667778***** PP

         GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +E  ll+++i  +v   g +       l+ Wre +  aG++pv+ls++a  qa++llrkv+++g+ v +++++lvl+W+drpL+++SaW+
  CCG007532.1 464 IEMCLLKPKILAAVEGCGGR------MLSPWREVFAGAGMRPVQLSQFADFQAECLLRKVQVRGFYVAKRQAELVLCWHDRPLIATSAWK 547
                  **************877765......69*************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.352151527IPR005202Transcription factor GRAS
PfamPF035147.7E-93178547IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MKVPAPSPQN SSSSNNQSQN PKPVSCNNTN NNSRNISFNP NNRNSCYEPT SVLDLRRSPS  60
PARAGKPASV TDPIGWEDHV LQTLDWDSIM RELDFHDDSA PALINNFPQF GPCSEPQIHS  120
HNLPEFTASQ QIDATQFLNS EFNDMYINSI TTHNLTSLDL SHSFHNNIGN WNAGSDFIRE  180
LIKAADCFDS NELQLAQVIL ERLSHRLQSP NGKPLQRAAF FFKEALQCLL TSGSTRPQTN  240
PVFPSWSNTV QTIKAYKDFF SISPIPMFTD FTTNQAILDS LNGNSVFLHV IDFDIGFGCH  300
YASLMRELVD KADSCNKITT PLLRITAVVT EDTVTETKLI KERLSQFAYE LKIRFHVEFV  360
LFPTFEMLSF KAIKFVEGEK IAVLLSPTIF RHLGSTNKVT MFVNDFRRVS PSVVIFVDSE  420
GWTESGARLS FRRNFVNCLE FYSMMFESLD AAVITAGDDW ARKIEMCLLK PKILAAVEGC  480
GGRMLSPWRE VFAGAGMRPV QLSQFADFQA ECLLRKVQVR GFYVAKRQAE LVLCWHDRPL  540
IATSAWKQND ILLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-2321254737375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010999954.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232101e-162SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A2K2AFW50.0A0A2K2AFW5_POPTR; Uncharacterized protein
STRINGPOPTR_0005s12730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-157GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]