PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG007530.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 204aa    MW: 23748 Da    PI: 8.1963
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG007530.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.41.4e-1949102457
                  -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
     Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                  ++++++eq++ Le  F  ++++ +e++ +LA+ lgL+ rqV vWFqNrRa++k+
  CCG007530.1  49 KRKLSAEQVNFLEMNFDDEHKLETERKDKLASDLGLDPRQVAVWFQNRRARWKN 102
                  45899***********************************************95 PP
2HD-ZIP_I/II1192.5e-3848139293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +kr+ls+eqv++LE++F+ e+kLe+erK +la++Lgl+prqvavWFqnrRAR+k+k+lE++y++Lk+a++ ++ e+++Le+ev +L+e+l++
  CCG007530.1  48 RKRKLSAEQVNFLEMNFDDEHKLETERKDKLASDLGLDPRQVAVWFQNRRARWKNKKLEEEYTKLKTAHECIVIEKCQLESEVLKLKEQLSR 139
                  8***************************************************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.37443103IPR001356Homeobox domain
SMARTSM003891.2E-1846107IPR001356Homeobox domain
SuperFamilySSF466894.18E-1748110IPR009057Homeodomain-like
CDDcd000865.47E-1448104No hitNo description
PfamPF000469.1E-1749102IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.1E-2050110IPR009057Homeodomain-like
PRINTSPR000311.5E-57483IPR000047Helix-turn-helix motif
PROSITE patternPS00027078101IPR017970Homeobox, conserved site
PRINTSPR000311.5E-58399IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MNHKVEDHIA LISQLYPGLY TQMVPKQGES KPRQRRKKNT GEGISGARKR KLSAEQVNFL  60
EMNFDDEHKL ETERKDKLAS DLGLDPRQVA VWFQNRRARW KNKKLEEEYT KLKTAHECIV  120
IEKCQLESEV LKLKEQLSRT EKEIQRLSDR ADRVSTNSPS SSLSMAPEPP FLGEFAVLEG  180
YGDAFYMPPE NNYIPGMEWI NQYM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13550RKKNTGEGISGARKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010999952.11e-152PREDICTED: homeobox-leucine zipper protein ATHB-40-like
SwissprotQ9ZU708e-73ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLB9MXR71e-135B9MXR7_POPTR; Uncharacterized protein
STRINGPOPTR_0005s12760.11e-136(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47893257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18550.14e-65homeobox protein 21
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]