PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG007491.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 588aa    MW: 65941.2 Da    PI: 4.7899
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG007491.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS449.71.9e-1372195882374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  ++lL+ecA+a+s++++e+a+al+++l++++s +gdp qR+aay++e+Laar+a+s+  lykal+++e +   ss++laa+++++e++P++kf++++aN
  CCG007491.1 219 RRLLFECANAISEENNEKASALINELRQMVSIQGDPPQRIAAYMVEGLAARMAESGIYLYKALKCKEPP---SSDRLAAMQILFEICPCFKFGFMAAN 313
                  689*****************************************************************9...9************************* PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                   a+ ea++ge+rvHiiDfdi+qG Q+++L+q+La++p++ p+lR+Tgv++pes+  +   l+ +g+rL+k+Ae+l+vpfef++ va++++ +++++L+
  CCG007491.1 314 GAMIEAFKGERRVHIIDFDINQGSQYITLIQTLANQPGKLPNLRLTGVDDPESVqrHVGGLRIIGQRLEKLAEALKVPFEFHA-VASKTSVVSPSMLN 410
                  ****************************************************99888999***********************.7************* PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                  +kpgEal+Vn+++qlh+++desvs+ +erd++L++ ksl+Pk+v+vveq++++n+++F+ rf+ea +yysa+f sl+a+lpres++r +vE+++l+r+
  CCG007491.1 411 CKPGEALVVNFAFQLHHMPDESVSTVNERDQLLRMAKSLNPKLVTVVEQDVNTNTAPFFPRFTEAYNYYSAVFASLDATLPRESQDRLNVEKQCLARD 508
                  ************************************************************************************************** PP

         GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ivn+vaceg+er+er e ++kWr+r+++aGF+p ++s +++++++ l+++++++ y+++ee g+l +gW+d++Lv++SaW+
  CCG007491.1 509 IVNIVACEGEERIERYEVAGKWRARMKMAGFTPRSISPSVVDSIRKLIKQYSDR-YMLKEEVGALHFGWEDKSLVFASAWK 588
                  ****************************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.203192569IPR005202Transcription factor GRAS
PfamPF035146.7E-135219588IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MSLVGSAELS ARAYGNNKLY SLKGSNDNSG LSAQIFGPDK RQNMYMTDSY SCESYEKYFL  60
DSPTEEIIQP SSSDISGNSA HHPQGASSYQ PRKSSGSTMF PHDPYNASFN LTTPCDGYQF  120
ISESDYLDIE SPDQLDYDEY KMKLKLQELE RALLEDNEED DEDGMFGNSQ SMEMDAEWSD  180
PIQNGMLHDS PKESSSSDSY LSSISSNKEV SQLSPRTPRR LLFECANAIS EENNEKASAL  240
INELRQMVSI QGDPPQRIAA YMVEGLAARM AESGIYLYKA LKCKEPPSSD RLAAMQILFE  300
ICPCFKFGFM AANGAMIEAF KGERRVHIID FDINQGSQYI TLIQTLANQP GKLPNLRLTG  360
VDDPESVQRH VGGLRIIGQR LEKLAEALKV PFEFHAVASK TSVVSPSMLN CKPGEALVVN  420
FAFQLHHMPD ESVSTVNERD QLLRMAKSLN PKLVTVVEQD VNTNTAPFFP RFTEAYNYYS  480
AVFASLDATL PRESQDRLNV EKQCLARDIV NIVACEGEER IERYEVAGKW RARMKMAGFT  540
PRSISPSVVD SIRKLIKQYS DRYMLKEEVG ALHFGWEDKS LVFASAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6522458725378Protein SCARECROW
5b3h_A1e-6522458724377Protein SCARECROW
5b3h_D1e-6522458724377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164550.0AC216455.1 Populus trichocarpa clone POP032-C02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010999834.10.0PREDICTED: scarecrow-like protein 1
RefseqXP_010999835.10.0PREDICTED: scarecrow-like protein 1
RefseqXP_010999836.10.0PREDICTED: scarecrow-like protein 1
RefseqXP_010999837.10.0PREDICTED: scarecrow-like protein 1
RefseqXP_010999838.10.0PREDICTED: scarecrow-like protein 1
RefseqXP_010999839.10.0PREDICTED: scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A2K2AIQ00.0A0A2K2AIQ0_POPTR; Uncharacterized protein
STRINGPOPTR_0005s20890.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49883457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]