PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG007207.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 455aa MW: 52996.4 Da PI: 6.4218

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG007207.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.9	8.3e-24	65	151	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn+ Ak+vGFsvrk+ ++sk +g +++r+f+Cskeg+r+++k++ + ++ r+etrtgC a++ v+ + dgk++vt++e eHnH+ CCG007207.1 65 RFYNKRAKTVGFSVRKNWVNRSKVHGLVVSRKFTCSKEGYRRKDKRD-LSVKKYRKETRTGCLAHMIVTCQPDGKYRVTHFEAEHNHD 151 5*****************************************999.9999*********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-21	65	151	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.0E-27	275	369	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MSDNSMAIRL HKSDKLDLNL DQDCRSLNFA MVNSSQFSNS SKDGVNRGGV LKIGREFESD 60 EHVYRFYNKR AKTVGFSVRK NWVNRSKVHG LVVSRKFTCS KEGYRRKDKR DLSVKKYRKE 120 TRTGCLAHMI VTCQPDGKYR VTHFEAEHNH DNIYPSNAES QLLWREIHVD QAAEGDLPSN 180 SGTESSSTFE LVNRQFEAWQ SLDQLPMDFD NSLRSERTRD MKEGEAGRLL HYFQRQHIEN 240 PSFIHSIQVD INDKVSNIFW ADDKMVVDYD HFGDVVFLDT SYQMNKDLQP FLQFIGVNHH 300 NQAIIFAAAL LFDDTVESLK WLFNTFVETM SGKKPKVILT DQDAAIVEAI NSILPETSHR 360 ICVWQMYQNA LEHLSLVVKD MESFSDDFRS CIYDYNNEEA FVHAWEGLLD KYGLQQNDRL 420 RWMLREREKW SIAYGRNTFF LDMKGSHVAE DLSNN

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MSDNSMAIRL HKSDKLDLNL DQDCRSLNFA MVNSSQFSNS SKDGVNRGGV LKIGREFESD  60
EHVYRFYNKR AKTVGFSVRK NWVNRSKVHG LVVSRKFTCS KEGYRRKDKR DLSVKKYRKE  120
TRTGCLAHMI VTCQPDGKYR VTHFEAEHNH DNIYPSNAES QLLWREIHVD QAAEGDLPSN  180
SGTESSSTFE LVNRQFEAWQ SLDQLPMDFD NSLRSERTRD MKEGEAGRLL HYFQRQHIEN  240
PSFIHSIQVD INDKVSNIFW ADDKMVVDYD HFGDVVFLDT SYQMNKDLQP FLQFIGVNHH  300
NQAIIFAAAL LFDDTVESLK WLFNTFVETM SGKKPKVILT DQDAAIVEAI NSILPETSHR  360
ICVWQMYQNA LEHLSLVVKD MESFSDDFRS CIYDYNNEEA FVHAWEGLLD KYGLQQNDRL  420
RWMLREREKW SIAYGRNTFF LDMKGSHVAE DLSNN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006377078.2	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X2
Refseq	XP_024437515.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_024437516.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBL	A0A3N7FUN9	0.0	A0A3N7FUN9_POPTR; Uncharacterized protein
TrEMBL	A0A3N7FYC1	0.0	A0A3N7FYC1_POPTR; Uncharacterized protein
STRING	POPTR_0012s13550.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-80	FAR1-related sequence 5