PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG007175.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 214aa    MW: 24622.5 Da    PI: 9.4568
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG007175.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.77.2e-29959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien + rqvtfskR+ng+lKKA+ELS+LCdaevaviifs++g+l+ ++s
  CCG007175.1  9 KRIENATSRQVTFSKRKNGLLKKAYELSILCDAEVAVIIFSQKGTLFKFAS 59
                 79**********************************************986 PP
2K-box71.72.2e-24841731099
        K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                   e+  e+l+qe+a++ k+ie ++  qR+llG+dL+s+s +eL+ + +qLe sl+kiR++K++l++eqie+lq ke+ l  en +L+k+ +
  CCG007175.1  84 MEQSKEQLRQESANMAKKIEIIEILQRKLLGQDLDSCSPEELHDIGNQLEISLSKIRARKTQLFKEQIEQLQAKERLLLMENAMLTKQCD 173
                  5677899*******************************************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.427161IPR002100Transcription factor, MADS-box
SMARTSM004325.3E-40160IPR002100Transcription factor, MADS-box
CDDcd002659.20E-39279No hitNo description
PRINTSPR004045.8E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-30374IPR002100Transcription factor, MADS-box
PfamPF003198.5E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-303859IPR002100Transcription factor, MADS-box
PfamPF014863.3E-2485172IPR002487Transcription factor, K-box
PROSITE profilePS5129714.92488178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009838Biological Processabscission
GO:0009909Biological Processregulation of flower development
GO:0010150Biological Processleaf senescence
GO:0080187Biological Processfloral organ senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MARGKIQLKR IENATSRQVT FSKRKNGLLK KAYELSILCD AEVAVIIFSQ KGTLFKFAST  60
DQIQKTIDRY RKNARQLHTD RIDMEQSKEQ LRQESANMAK KIEIIEILQR KLLGQDLDSC  120
SPEELHDIGN QLEISLSKIR ARKTQLFKEQ IEQLQAKERL LLMENAMLTK QCDAQPLQQS  180
TQSNQVVSYL SSCSKSSEIV ETDLYIGLPQ MRCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-20161161MEF2C
5f28_B6e-20161161MEF2C
5f28_C6e-20161161MEF2C
5f28_D6e-20161161MEF2C
6byy_A4e-20161161MEF2 CHIMERA
6byy_B4e-20161161MEF2 CHIMERA
6byy_C4e-20161161MEF2 CHIMERA
6byy_D4e-20161161MEF2 CHIMERA
6bz1_A5e-20161161MEF2 CHIMERA
6bz1_B5e-20161161MEF2 CHIMERA
6bz1_C5e-20161161MEF2 CHIMERA
6bz1_D5e-20161161MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00576DAPTransfer from AT5G62165Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011030023.11e-154PREDICTED: MADS-box protein SOC1-like
RefseqXP_011030024.11e-154PREDICTED: MADS-box protein SOC1-like
SwissprotQ9FIS13e-70AGL42_ARATH; MADS-box protein AGL42
TrEMBLB9I4G51e-146B9I4G5_POPTR; Uncharacterized protein
STRINGXP_002510866.11e-85(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66630102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.36e-72AGAMOUS-like 42