PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG007167.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Trihelix

Protein Properties

Length: 994aa MW: 111459 Da PI: 7.4221

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG007167.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	25.3	3.9e-08	228	283	20	75
trihelix 20 rlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 ++ rgk ++ + +ev++++ ++ ++r +k+ kw+n+ ++++k+ e+e++ + e+ CCG007167.1 228 QSTRGKTRADKDREVAEFLNRHDVHRDAKTAGTKWDNMLGEFRKVYEWERGDKREQ 283 566889999999**************************************974433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF56112	2.97E-15	843	977	IPR011009	Protein kinase-like domain
Gene3D	G3DSA:1.10.510.10	1.3E-5	845	939	No hit	No description
CDD	cd00180	3.77E-12	850	978	No hit	No description
Gene3D	G3DSA:1.10.510.10	5.1E-4	946	985	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 994 aa Download sequence Send to blast
MGENKGETTK KHQQQQLSSS SSPSPKGPIE ESTELRSLHH QQTTSAAVTG APFIPAPLFV 60 PIGATSSPFE QQFETVNPKR ARYSSAQWKL LPSASQQQPL PTQAQMATVV SSEATPSLTT 120 NPTQQKQPRT TAEASSSDTN SSPLRSPVPS LSAASAQETS KPEREPHQHQ FRKGKYVSPV 180 WKPNEMLWLA RAWRFQYQGG SDLTSRGEQL PETTVGQVTS GDTAIGVQST RGKTRADKDR 240 EVAEFLNRHD VHRDAKTAGT KWDNMLGEFR KVYEWERGDK REQMGKSYFR LSPYERKAHR 300 LPASFDEEVF EELSQFMGPK MRTQSRGPSL IGSGDDSTRG TSLAAARALP PPPPFKEDDL 360 LLSGRTRQLV FTSGGEAYFH GTRGSLLGFD TAMDAVVGSS SSTKELRRIG KVRMTWEESV 420 SLWGEEGEHH RGRVRLQGSS FLNADELTFF DDSMVACTME AFEDGALKGF SVDKFVSGQQ 480 IKVFGRRKPS PSASVTPPGF TERVQLPLTE PSIRLPPWEF QDPTEYYVGC LRVPPTTLPS 540 LFELSWYLQE PPPEELRFPL RRDVYRDLPQ GKEFFFTISN DPLDCRGITY DILSSIIRTN 600 PSISGATSSS RDSFIGVWDD CINRIVSKFC SVEVVIVRKQ PSSPMVDTLQ DEWPNVTGFV 660 RNFCLWRGEE TDQLREGQVD PSSSIIEKLL WTYLDLPYIL GYYAVGYVVT FCALCRSQDR 720 IIRTDLYSLD LSSPVERLKA LVPCYRVAGL LPLLADRCFN NFNNGGTYKQ LTFSDFERVD 780 MGNGNIMEMT PNTVTRLFSS RRKWAAVKEI YDCLGHRIPH AEFIYRSSEK DLALVFKPRG 840 VKFKPNNCEQ LVEALKYVTQ ALVALHDLSF MHRDLSWDKV MRRSDSENEW FVSGFDDAVG 900 APQLNPVHGV GEARGRHAPE MGRGMHGVKV DVWGVGHLVR TCGLGPNGVP KMLRELQNRC 960 LDQNPEQRPT AADCYHHLLQ VQSSLQPSSS GVPY

Sequence ? help Back to Top

Protein Sequence Length: 994 aa Download sequence Send to blast

MGENKGETTK KHQQQQLSSS SSPSPKGPIE ESTELRSLHH QQTTSAAVTG APFIPAPLFV  60
PIGATSSPFE QQFETVNPKR ARYSSAQWKL LPSASQQQPL PTQAQMATVV SSEATPSLTT  120
NPTQQKQPRT TAEASSSDTN SSPLRSPVPS LSAASAQETS KPEREPHQHQ FRKGKYVSPV  180
WKPNEMLWLA RAWRFQYQGG SDLTSRGEQL PETTVGQVTS GDTAIGVQST RGKTRADKDR  240
EVAEFLNRHD VHRDAKTAGT KWDNMLGEFR KVYEWERGDK REQMGKSYFR LSPYERKAHR  300
LPASFDEEVF EELSQFMGPK MRTQSRGPSL IGSGDDSTRG TSLAAARALP PPPPFKEDDL  360
LLSGRTRQLV FTSGGEAYFH GTRGSLLGFD TAMDAVVGSS SSTKELRRIG KVRMTWEESV  420
SLWGEEGEHH RGRVRLQGSS FLNADELTFF DDSMVACTME AFEDGALKGF SVDKFVSGQQ  480
IKVFGRRKPS PSASVTPPGF TERVQLPLTE PSIRLPPWEF QDPTEYYVGC LRVPPTTLPS  540
LFELSWYLQE PPPEELRFPL RRDVYRDLPQ GKEFFFTISN DPLDCRGITY DILSSIIRTN  600
PSISGATSSS RDSFIGVWDD CINRIVSKFC SVEVVIVRKQ PSSPMVDTLQ DEWPNVTGFV  660
RNFCLWRGEE TDQLREGQVD PSSSIIEKLL WTYLDLPYIL GYYAVGYVVT FCALCRSQDR  720
IIRTDLYSLD LSSPVERLKA LVPCYRVAGL LPLLADRCFN NFNNGGTYKQ LTFSDFERVD  780
MGNGNIMEMT PNTVTRLFSS RRKWAAVKEI YDCLGHRIPH AEFIYRSSEK DLALVFKPRG  840
VKFKPNNCEQ LVEALKYVTQ ALVALHDLSF MHRDLSWDKV MRRSDSENEW FVSGFDDAVG  900
APQLNPVHGV GEARGRHAPE MGRGMHGVKV DVWGVGHLVR TCGLGPNGVP KMLRELQNRC  960
LDQNPEQRPT AADCYHHLLQ VQSSLQPSSS GVPY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011030014.1	0.0	PREDICTED: uncharacterized protein LOC105129591
TrEMBL	B9I4H2	0.0	B9I4H2_POPTR; Uncharacterized protein
STRING	POPTR_0012s14050.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11857	28	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	6e-07	Trihelix family protein