PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CCG007114.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 246aa MW: 28630.7 Da PI: 7.5385 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 83.7 | 1.2e-26 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien rqvtf+kRr g++KK +ELSvLCdae+ +iifss+gklye+++ CCG007114.1 10 RIENRAARQVTFAKRRGGLFKKTHELSVLCDAEIGLIIFSSNGKLYEFCN 59 8***********************************************95 PP | |||||||
2 | K-box | 64.1 | 5.3e-22 | 80 | 167 | 9 | 96 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 e++++e+ ++e+++++ke++ Lq + R ++Ge+L+sL ++ L +Le+qLe s++k+R++K ell +q+++l++k k+l+een++++ CCG007114.1 80 PESNDWEQIEKESKRIRKETDDLQLSVRCYKGENLSSLHHEGLVELEKQLECSVNKVRAQKLELLQQQVDNLRRKGKMLEEENQQIQY 167 56788999****************************************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.1E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.235 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.10E-38 | 2 | 72 | No hit | No description |
SuperFamily | SSF55455 | 2.35E-28 | 2 | 76 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.4E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.5E-19 | 81 | 168 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.862 | 85 | 181 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 246 aa Download sequence Send to blast |
MGRGKIAITR IENRAARQVT FAKRRGGLFK KTHELSVLCD AEIGLIIFSS NGKLYEFCNE 60 SSSIPHIIRR YEISKGMRVP ESNDWEQIEK ESKRIRKETD DLQLSVRCYK GENLSSLHHE 120 GLVELEKQLE CSVNKVRAQK LELLQQQVDN LRRKGKMLEE ENQQIQYHLH HVAMLEQQQA 180 AAAMVKPMEQ QRMLEQFQFS DEDQPISSLL QLAPLPPQFQ PYRVQPTQPN LQDFSLSIPD 240 PCNYIW |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 8e-18 | 1 | 71 | 1 | 69 | MEF2C |
5f28_B | 8e-18 | 1 | 71 | 1 | 69 | MEF2C |
5f28_C | 8e-18 | 1 | 71 | 1 | 69 | MEF2C |
5f28_D | 8e-18 | 1 | 71 | 1 | 69 | MEF2C |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 150 | 156 | LRRKGKM |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011029935.1 | 0.0 | PREDICTED: MADS-box protein FBP24-like isoform X1 | ||||
Refseq | XP_011029937.1 | 0.0 | PREDICTED: MADS-box protein FBP24-like isoform X1 | ||||
Refseq | XP_011029938.1 | 0.0 | PREDICTED: MADS-box protein FBP24-like isoform X1 | ||||
TrEMBL | B9I4N6 | 1e-175 | B9I4N6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s14770.1 | 1e-178 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4935 | 29 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G23260.2 | 2e-58 | MIKC_MADS family protein |