PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG007057.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Protein Properties

Length: 898aa MW: 98417.5 Da PI: 7.5001

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG007057.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57.8	2e-18	350	449	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k l+ sd+++ grlvlpkk+ae++ ++++e+ l+++d++g++W +++++ +++s++yvl+ G + +L++gD+v+F++ + e++lv+ CCG007057.1 350 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLRVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDIVTFSRLE-PEGKLVM 445 89************************555567778***********99899999999.*******************766.7777777 PP EEE- CS B3 95 kvfr 98 ++++ CCG007057.1 446 GFRK 449 7776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.7E-30	347	453	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.27E-19	348	449	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.22E-21	348	449	No hit	No description
SMART	SM01019	7.3E-19	350	451	IPR003340	B3 DNA binding domain
Pfam	PF02362	9.3E-16	350	449	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.293	350	451	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	14.307	576	626	IPR011124	Zinc finger, CW-type
Pfam	PF07496	1.4E-12	581	623	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 898 aa Download sequence Send to blast
MSSSSLAATS TTATATNNNN NNNTSCSSSS STVLSRKCFN SDCTDFKSRK GWRLRSGDYA 60 DLCDRCASAH EEGRFCETFH LNASGWRGCE SCGKRVHCGC IVSLQAFTLL DAGGIACISC 120 ARKSFVLTSN PAWPPLFCHP PFPERLKDFS VKSWSQLAGS GPVPWRQAPS LFNSSATQSE 180 LQPRMPYEVD RLNAGERFSA LSLEKRKLED FPERFINGSP RNHLQDIVEN GNAGIIDDEQ 240 QQMFSSLRED ISAQQFGITT PYASPSESKG QIEGSVNPLQ PAPLPPFAKR FHGPLHKGVD 300 SLVDGQIRNG RPRVDARGKS QLLPRYWPRF TDEELQQISG NPNSVIKPLF EKMLSASDAG 360 RIGRLVLPKK CAEAYFPPIS QPEGLPLRVQ DSKGKEWIFQ FRFWPNNNSR MYVLEGVTPC 420 IQNMQLQAGD IVTFSRLEPE GKLVMGFRKA SSASLSDQDN ETSQTGDGAS ANGDAEMGPS 480 PWSKVDKSGY IAKEVLEAKS SIKKRKSSTL GSKSKRLRIE NEDMIELKLT WEEAQGLLRP 540 APDHVPSIVV IEGFEFEEYE DAPVLGKPTI FAMDNVGHKI QWVQCEDCLK WRKLPLNVLL 600 PSKWTCSGNT WDSERSSCSV AQDLTSEQLE NLLPSRNLVT SKRLKAAKKD IDNVEALGGL 660 DTLANLAILG EGEALLASSQ ATTKHPRHRP GCSCIVCIQP PSGKGPKHKQ TCTCNVCQTV 720 KRRFKTLMMK REKKQSEKEA ETTRKQQESS AEKLLDDDPS PSSNAGSASG SPNKKKAVSE 780 VSDDDPNRMK SSTSPFKGQI DLNIQPERDD ELSPGSDSGG MMRMLQDASE RYLRMQRFLS 840 SDGDSIPASN HSVSSWGADE KAGSGIMLGG SHQDASEDHP SAFSLIASAS ASASTPAT

Sequence ? help Back to Top

Protein Sequence Length: 898 aa Download sequence Send to blast

MSSSSLAATS TTATATNNNN NNNTSCSSSS STVLSRKCFN SDCTDFKSRK GWRLRSGDYA  60
DLCDRCASAH EEGRFCETFH LNASGWRGCE SCGKRVHCGC IVSLQAFTLL DAGGIACISC  120
ARKSFVLTSN PAWPPLFCHP PFPERLKDFS VKSWSQLAGS GPVPWRQAPS LFNSSATQSE  180
LQPRMPYEVD RLNAGERFSA LSLEKRKLED FPERFINGSP RNHLQDIVEN GNAGIIDDEQ  240
QQMFSSLRED ISAQQFGITT PYASPSESKG QIEGSVNPLQ PAPLPPFAKR FHGPLHKGVD  300
SLVDGQIRNG RPRVDARGKS QLLPRYWPRF TDEELQQISG NPNSVIKPLF EKMLSASDAG  360
RIGRLVLPKK CAEAYFPPIS QPEGLPLRVQ DSKGKEWIFQ FRFWPNNNSR MYVLEGVTPC  420
IQNMQLQAGD IVTFSRLEPE GKLVMGFRKA SSASLSDQDN ETSQTGDGAS ANGDAEMGPS  480
PWSKVDKSGY IAKEVLEAKS SIKKRKSSTL GSKSKRLRIE NEDMIELKLT WEEAQGLLRP  540
APDHVPSIVV IEGFEFEEYE DAPVLGKPTI FAMDNVGHKI QWVQCEDCLK WRKLPLNVLL  600
PSKWTCSGNT WDSERSSCSV AQDLTSEQLE NLLPSRNLVT SKRLKAAKKD IDNVEALGGL  660
DTLANLAILG EGEALLASSQ ATTKHPRHRP GCSCIVCIQP PSGKGPKHKQ TCTCNVCQTV  720
KRRFKTLMMK REKKQSEKEA ETTRKQQESS AEKLLDDDPS PSSNAGSASG SPNKKKAVSE  780
VSDDDPNRMK SSTSPFKGQI DLNIQPERDD ELSPGSDSGG MMRMLQDASE RYLRMQRFLS  840
SDGDSIPASN HSVSSWGADE KAGSGIMLGG SHQDASEDHP SAFSLIASAS ASASTPAT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	2e-64	328	453	2	127	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011043283.1	0.0	PREDICTED: B3 domain-containing protein Os07g0563300-like isoform X2
Swissprot	Q0D5G4	0.0	Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBL	A0A2K1YFG8	0.0	A0A2K1YFG8_POPTR; Uncharacterized protein
STRING	POPTR_0004s03530.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7738	31	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	1e-157	HSI2-like 1