PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG006929.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YB
Protein Properties Length: 149aa    MW: 16769.7 Da    PI: 5.6904
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG006929.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1597.2e-50498397
        NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
                 eqdr+lPianv+r+mkk+lP  akisk+ak+t+qec++efisfvt+easdkcq+e+rkt+ngdd++wal +lGf+d++e++  yl+kyre+e+e+
  CCG006929.1  4 EQDRLLPIANVGRMMKKILPPTAKISKEAKQTMQECATEFISFVTGEASDKCQKENRKTVNGDDICWALISLGFDDHAEAMVRYLHKYREAERER 98
                 8*******************************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.3E-503122IPR009072Histone-fold
SuperFamilySSF471131.45E-375119IPR009072Histone-fold
PfamPF008081.7E-26872IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.4E-153654No hitNo description
PROSITE patternPS0068503955IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.4E-155573No hitNo description
PRINTSPR006151.4E-157492No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MDDEQDRLLP IANVGRMMKK ILPPTAKISK EAKQTMQECA TEFISFVTGE ASDKCQKENR  60
KTVNGDDICW ALISLGFDDH AEAMVRYLHK YREAERERST NQHKASGTDQ GEEPNHESKQ  120
PKQPIEAPSN GVEFRVLDKG NSSSFTNPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-40493392Transcription factor HapC (Eurofung)
4g92_B1e-40493392Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011036836.11e-110PREDICTED: nuclear transcription factor Y subunit B-4-like
SwissprotO040273e-55NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLB9N4G41e-106B9N4G4_POPTR; Uncharacterized protein
STRINGPOPTR_0005s02750.11e-107(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.11e-57nuclear factor Y, subunit B4
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]