PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG006828.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 471aa    MW: 53259.1 Da    PI: 6.2838
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG006828.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS445.73e-136494661374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lLl+cA++v++g+ e+a+  L+++s+laspdgd+mqR+aayft +La r+++ +++l kal+p+++s    see+ +++lf+e++ +lk+s++++
  CCG006828.1  49 LIHLLLACANHVAAGSIENANIGLEQISHLASPDGDTMQRIAAYFTAGLADRILKGWPGLHKALNPKQAS--LISEEILVQRLFFELFTFLKLSYVIT 144
                  689*****************************************************************98..79************************ PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  NqaI ea+ege++vHiiD++  +++QW++Llq+L++Rpegpp+lRiTg+++    +ke l +++ rL++ Ae+l++pf+fn+ ++++le+l+le+Lrv
  CCG006828.1 145 NQAIIEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHE----QKEVLDQMALRLTEEAEKLDIPFQFNP-IVSKLENLDLENLRV 237
                  ***************************************************....9**************************.7999*********** PP

         GRAS 197 kpgEalaVnlvlqlhrll.......................................................desvsleserdevLklvkslsPkvv 239
                  k+gEalaV++vlqlh+ll                                                       + s     +  ++L++++slsPk++
  CCG006828.1 238 KTGEALAVSSVLQLHTLLamddemhrrnspsgyqnpnsnhfqrlkinqnrrtlgdwlekdvvspdsalsplslAASP----KMGSFLNALRSLSPKLM 331
                  *****************************************************************997754444444....4566************* PP

         GRAS 240 vvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337
                  v++eqe++hn+ +++er++eal +y+alfd+le++++r+s er+kvE++l+g+ei+n++aceg++r+erhe+lekW  rle +GF+ vpls++   qa
  CCG006828.1 332 VITEQESSHNGFNLMERVTEALIFYAALFDCLESTVSRASLERHKVEKMLFGEEIKNIIACEGTDRKERHEKLEKWILRLELSGFGIVPLSYHGRLQA 429
                  ************************************************************************************************** PP

         GRAS 338 klllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ++ l+ ++ dgy+++ee+g+lv++W+drpL+svSaWr
  CCG006828.1 430 NRFLQSYGYDGYKIKEENGCLVICWQDRPLFSVSAWR 466
                  ************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.7823446IPR005202Transcription factor GRAS
PfamPF035141.1E-13349466IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MAGMAQEEGS SSVTSSPLQF FPWMPLSPGT GSPYPWLREL KSEDRGLCLI HLLLACANHV  60
AAGSIENANI GLEQISHLAS PDGDTMQRIA AYFTAGLADR ILKGWPGLHK ALNPKQASLI  120
SEEILVQRLF FELFTFLKLS YVITNQAIIE AMEGEKMVHI IDLNSFEPAQ WINLLQTLSA  180
RPEGPPHLRI TGIHEQKEVL DQMALRLTEE AEKLDIPFQF NPIVSKLENL DLENLRVKTG  240
EALAVSSVLQ LHTLLAMDDE MHRRNSPSGY QNPNSNHFQR LKINQNRRTL GDWLEKDVVS  300
PDSALSPLSL AASPKMGSFL NALRSLSPKL MVITEQESSH NGFNLMERVT EALIFYAALF  360
DCLESTVSRA SLERHKVEKM LFGEEIKNII ACEGTDRKER HEKLEKWILR LELSGFGIVP  420
LSYHGRLQAN RFLQSYGYDG YKIKEENGCL VICWQDRPLF SVSAWRFRRY D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-61334682380Protein SCARECROW
5b3h_D1e-61334682380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1840730.0AC184073.2 Populus trichocarpa clone Pop1-50D1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010999589.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLB9GM400.0B9GM40_POPTR; Uncharacterized protein
STRINGPOPTR_0001s06090.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]