PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG006719.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 564aa    MW: 62272 Da    PI: 5.264
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG006719.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox17.47.5e-06224274756
                  --HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   7 ftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  ++k+q ++L+e F+  n+    + r  LA +l+L+   V  WF  +R + k
  CCG006719.1 224 LSKKQSHTLQEIFKIhNPCTPSTLRLALAGQLKLDPVIVDDWFRMKRERTK 274
                  6899**********878888888999*********************9987 PP
2Homeobox52.86.5e-17300352254
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  rk+ +++keq   Lee F++++++  +++  LAk+l+L  rqV vWFqNrRa+
  CCG006719.1 300 RKKLRLSKEQSAFLEESFKEHNTLHPKQKLALAKQLNLRPRQVEVWFQNRRAR 352
                  778899**********************************************8 PP
3HD-ZIP_I/II81.81e-26300352153
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRAR 53 
                  +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRAR
  CCG006719.1 300 RKKLRLSKEQSAFLEESFKEHNTLHPKQKLALAKQLNLRPRQVEVWFQNRRAR 352
                  69**************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.268215276IPR001356Homeobox domain
SMARTSM003890.048218280IPR001356Homeobox domain
CDDcd000860.00332219277No hitNo description
Gene3DG3DSA:1.10.10.604.1E-5219282IPR009057Homeodomain-like
SuperFamilySSF466897.27E-6220276IPR009057Homeodomain-like
SuperFamilySSF466896.42E-16295352IPR009057Homeodomain-like
PROSITE profilePS5007115.694296356IPR001356Homeobox domain
SMARTSM003892.2E-15298360IPR001356Homeobox domain
PfamPF000462.2E-14300352IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-16300352IPR009057Homeodomain-like
CDDcd000862.41E-14300352No hitNo description
Gene3DG3DSA:3.70.10.101.8E-6478516No hitNo description
PfamPF027478.7E-7483518IPR022649Proliferating cell nuclear antigen, PCNA, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006275Biological Processregulation of DNA replication
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MAETLDLNSG PDLSTSPTDP SQPSVVNFWY QILKSNQEYL QHTLRPSTSR LDSEWGHVFD  60
KSSKKKRQRM DTNSGAGSGV NSASDLSEAL SAVSAALSLS SSASSGVRDQ WEKEGAEFIR  120
KGVEELQDEM VDNSNENPIS FDIQSLSSES SEDDVPLSDS NENNSSSNGL GKQPGIGLFS  180
PSLQVESGIA TNDDGHRGIR DSEVDTAKTS DYEENQLIRR KLGLSKKQSH TLQEIFKIHN  240
PCTPSTLRLA LAGQLKLDPV IVDDWFRMKR ERTKLKQTEA IDAERASSRA RNDEENGLTR  300
KKLRLSKEQS AFLEESFKEH NTLHPKQKLA LAKQLNLRPR QVEVWFQNRR ARGGNGNGLD  360
FACDSSVPRE GISGLDGDWR QGLDEPSKYT KKRRRGNTDV SSSSALNSAS DLSLSEALSQ  420
ISKDLSLSSP SLCSGEEEKD KENEEAHSPE SHDGNLQAEH KNLVDCGAWT SFKLGKLDVE  480
QVTDFSAMQL MMTAEFARIC KDLSSIGDTV VISVTKVGPL SNTVKIFSSL DLPVVVELKF  540
AEIGSTDRRG RAKPEVYVIY FLVH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16368KKKRQR
2298304TRKKLRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011016614.11e-121PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1
RefseqXP_011016615.11e-121PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X2
RefseqXP_011039463.11e-121PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1
RefseqXP_011039464.11e-121PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X2
RefseqXP_011039466.11e-121PREDICTED: protein FAR1-RELATED SEQUENCE 12-like isoform X4
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-20homeobox from Arabidopsis thaliana