PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG006701.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 277aa    MW: 30195.3 Da    PI: 6.3401
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG006701.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.24e-17189225135
         GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++Cgt +  Tp++Rrgp+g+++LCnaCGl+++ +g+
  CCG006701.1 189 CTHCGTNSksTPMMRRGPSGPRSLCNACGLFWANRGT 225
                  *******99************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062031.0E-15121163IPR010402CCT domain
PROSITE profilePS5101712.451121163IPR010402CCT domain
PROSITE profilePS5011411.319183243IPR000679Zinc finger, GATA-type
SMARTSM004012.3E-16183236IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.4E-16183236IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.24E-12185236No hitNo description
CDDcd002023.97E-16188233No hitNo description
PROSITE patternPS003440189216IPR000679Zinc finger, GATA-type
PfamPF003209.0E-15189225IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MYTHSQPMNV HNQIASPGVD DDRAPADSID HHHHIHYEDG TPTVVDDVSP ESVYVNAGVA  60
ASELGIQPSD CSSQLTLTFR GQVQAVLLLL GGCELTPGLE MTPQNQRGVV DYPARCTQPQ  120
RAASLSRFRQ KRKERCFDKK VRYGVRQEVA LRMQRNKGQF TSAKKSEGGY GWDGVQDSGL  180
DDSQQETSCT HCGTNSKSTP MMRRGPSGPR SLCNACGLFW ANRGTLRDLT KKTDHSATLI  240
EQGEAEANDS DSGTAIDTNN NLVTYANGGD TALITEH
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2771453e-70GU277145.1 Populus balsamifera isolate HAY07 haplotype B GATA type zinc finger protein ZIM gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011013924.10.0PREDICTED: GATA transcription factor 25-like
SwissprotQ9LRH61e-76GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A2K2AH480.0A0A2K2AH48_POPTR; Uncharacterized protein
STRINGPOPTR_0002s11150.11e-166(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.23e-75GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]