PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG006623.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 400aa    MW: 44613.4 Da    PI: 7.1135
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG006623.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.32.2e-51141421128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 
                  + pGfrFhPtdeelv +yLk+k+++++l++ e ik+vdiyk++PwdLp + ++++eke+yf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ +
  CCG006623.1  14 MLPGFRFHPTDEELVGFYLKRKIQQRSLPI-ELIKQVDIYKYDPWDLPkELATTGEKELYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSdG 110
                  579***************************.89***************445566889**************************************966 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  ++ +glkk+Lvfy+gra kg ktdW+mhe+rl
  CCG006623.1 111 SKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 142
                  677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.59E-5613173IPR003441NAC domain
PROSITE profilePS5100555.35414173IPR003441NAC domain
PfamPF023651.6E-2416142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MDEKNDVDKI DDVMLPGFRF HPTDEELVGF YLKRKIQQRS LPIELIKQVD IYKYDPWDLP  60
KELATTGEKE LYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSDG SKCIGLKKSL  120
VFYRGRAAKG IKTDWMMHEF RLPSLTEPSP PKKLLDKSLP ANDAWAICRI FKKTNSMAQR  180
ALSHSWVSPL PDTTASDLFA QGAQFPQLCS ENMSCVTEIG SSFHIGSSSD FQQASSASFS  240
VLDIPSYKPI NPAVYKSYLC PVSNGDLSNN FLCSQLDISG PIKATDDAHS MLLNPALIGE  300
AGKTSESIEY EGSQQQFNGF SINLLQEMQA NTGTGDDEAG FRKNRSSIHE NNLVGTIRSI  360
GFPFGLPSHL ADAWKSNLVW DSPSCLREMS ATYSTNKCNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-501617917174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6051790.0KR605179.1 Manihot esculenta NAC transcription factors 41 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011013941.10.0PREDICTED: protein FEZ-like
SwissprotQ9ZVH01e-100FEZ_ARATH; Protein FEZ
TrEMBLA0A2K1X4Z90.0A0A2K1X4Z9_POPTR; Uncharacterized protein
STRINGPOPTR_0004s12850.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20133490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.11e-102NAC domain containing protein 94
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]