PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG006430.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 296aa    MW: 32327.6 Da    PI: 9.03
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG006430.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.41.4e-0996121227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  k elCr +   G+C+y ++C+FaHg+
  CCG006430.1  96 KKELCRAWEDLGHCRYAANCQFAHGK 121
                  78**********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.88E-794126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.9995122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-1195125IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-495121IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-696121IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MESLNKSVNK DSMLVKYLRG GAGSPIISPG GDRFSSNYQR NRSGSSRSPL SPLENVKAPM  60
MAEDEVLVMD GVLVSSVVRS GSSSNSSFSS GKSVHKKELC RAWEDLGHCR YAANCQFAHG  120
KEELHPTHFP IKNKAVVHTC NSYVNSPRSS PYVPKCRILP PAMTKAAVAA NQTAFSKIPG  180
YTSISPIAIS SEKFSKNSST PFSTPDHFLR TYISTRPEHC NKSPAANIKS EDSRMVFTAT  240
ISSDYWSPQD DGIEIALPHQ TDKCISMAEV DAYIHSVLYG PAIKKRLPVF SEFCPG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010999374.10.0PREDICTED: uncharacterized protein LOC105107224
RefseqXP_010999375.10.0PREDICTED: uncharacterized protein LOC105107224
RefseqXP_010999376.10.0PREDICTED: uncharacterized protein LOC105107224
RefseqXP_010999377.10.0PREDICTED: uncharacterized protein LOC105107224
TrEMBLB9H7E00.0B9H7E0_POPTR; Uncharacterized protein
STRINGPOPTR_0005s19930.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117801416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.14e-07C3H family protein