PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG006387.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 332aa    MW: 37494.2 Da    PI: 8.7773
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG006387.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.45.8e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W+++Ede+l ++++++G g+W+++++  g+ R++k+c++rw +yl
      CCG006387.1 14 KGLWSPDEDEKLSRYITEHGHGCWSSVPKLAGLERCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding35.62.2e-1167109145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      r r++ +E+ l +++   lG++ W++Ia+ ++ gRt++++k+ w+
      CCG006387.1  67 RTRFSCQEENLVIQLQSVLGNR-WSRIAAQLP-GRTDNEIKNLWN 109
                      679999****************.*********.*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-24664IPR009057Homeodomain-like
PROSITE profilePS5129423.964965IPR017930Myb domain
SuperFamilySSF466894.3E-2712108IPR009057Homeodomain-like
SMARTSM007171.5E-121363IPR001005SANT/Myb domain
PfamPF002496.2E-151461IPR001005SANT/Myb domain
CDDcd001672.82E-101761No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2165117IPR009057Homeodomain-like
PROSITE profilePS5129416.4266116IPR017930Myb domain
SMARTSM007174.0E-966114IPR001005SANT/Myb domain
PfamPF002491.0E-967109IPR001005SANT/Myb domain
CDDcd001671.69E-669109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MGRQSCGYKQ KLRKGLWSPD EDEKLSRYIT EHGHGCWSSV PKLAGLERCG KSCRLRWINY  60
LRPDLKRTRF SCQEENLVIQ LQSVLGNRWS RIAAQLPGRT DNEIKNLWNS SIKKKLMQKG  120
IDTNTHKPLS EVKLSTSKCT EKASRELDAA ISLNLKAESS KPSLIDVSSC KIEKGDDNLN  180
ASKTSAHQEF FPDKSLPFNR YTNIQHSTLD SIAYLQFPVQ QLSHEQLKLD QKCSLFEPNQ  240
ELNSRTPVPT ISRSIISAQM DNKIYAGLPF HSKGTFNNIH WDSSNCSSES SEFQKKSLFD  300
SNILPWGLAD DGGSSDKTLQ LHSADAETTD IK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-25121165108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010999343.10.0PREDICTED: transcription factor MYB3-like
TrEMBLA0A2I4KKU70.0A0A2I4KKU7_POPTR; MYB family protein
STRINGPOPTR_0010s00690.11e-114(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2810633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G57560.11e-78myb domain protein 50