PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG006244.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 209aa    MW: 24116.6 Da    PI: 9.655
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG006244.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind102.24.5e-32331332102
                   HHHHHHHHHC.........TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
  HSF_DNA-bind   2 Flkklyeile.........deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                   Fl+k+y+++e         +++ k+++sw+++g+ f+v+ + ef++  Lp+yFkh+nf+SF+RQLn+YgFkk+++++         weFkh++F +g
   CCG006244.1  33 FLSKTYDLIEegradgvvdHPHGKRIVSWNADGDGFIVWSPAEFSELTLPRYFKHNNFSSFIRQLNTYGFKKTSSKQ---------WEFKHEKFLRG 120
                   999******97777777777799**************************************************9988.........*********** PP

                   XXXXXXXXXXXXX CS
  HSF_DNA-bind  90 kkellekikrkks 102
                   ++++l +i rkk 
   CCG006244.1 121 RRHMLVEITRKKC 133
                   **********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.8E-3525126IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.4E-4029131IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.63E-2631131IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.3E-2933131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-114265IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-118092IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-1193105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MAANLLQLDP GATSKISSSS NIKSPKTKCP APFLSKTYDL IEEGRADGVV DHPHGKRIVS  60
WNADGDGFIV WSPAEFSELT LPRYFKHNNF SSFIRQLNTY GFKKTSSKQW EFKHEKFLRG  120
RRHMLVEITR KKCEPSTFPA YLEASNRESA TLAMEETNRL ILMEENKNLR REKMELEIQI  180
AQFKALEMKL LDCLTQDMGS HQNKTRRLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-17613114129Heat shock factor protein 1
5d5v_B8e-17613114129Heat shock factor protein 1
5d5v_D8e-17613114129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027843.11e-157PREDICTED: heat stress transcription factor A-2c-like
TrEMBLB9H2V91e-143B9H2V9_POPTR; Uncharacterized protein
STRINGPOPTR_0004s04260.11e-143(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113572839
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.14e-38heat shock transcription factor A1D