PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG006238.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LSD
Protein Properties Length: 142aa    MW: 15614.8 Da    PI: 4.6305
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG006238.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD129.31.4e-095175125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 Cg+Cr lLsYP G ++V+C +C+ +
  CCG006238.1 51 CGSCRRLLSYPKGVRHVQCQCCQMI 75
                 **********************975 PP

2zf-LSD1443.7e-1489113125
      zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                  Cg+C++lL+YP+GA+sVRC++C  V
  CCG006238.1  89 CGSCDVLLMYPYGASSVRCSSCRVV 113
                  **********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010534.0E-134878IPR005735Zinc finger, LSD1-type
PfamPF069431.5E-95175IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.5E-1286114IPR005735Zinc finger, LSD1-type
PfamPF069436.9E-1289113IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MASKEEDMAE AEEEEEEEGP PPGWQSFPPE PSLPPPPTPP PPPSELGQMV CGSCRRLLSY  60
PKGVRHVQCQ CCQMINFVLE AHEVGQVKCG SCDVLLMYPY GASSVRCSSC RVVTEIGEHN  120
RRPPWSVIQG YPPRPVPSNP IS
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027836.16e-98PREDICTED: protein LOL2
SwissprotO654269e-42LOL2_ARATH; Protein LOL2
TrEMBLA0A2K2APT06e-66A0A2K2APT0_POPTR; Uncharacterized protein
STRINGPOPTR_0004s04310.11e-66(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130263132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.15e-34lsd one like 2