PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG006217.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Dof

Protein Properties

Length: 321aa MW: 35072.4 Da PI: 8.8519

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG006217.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.7	1.1e-37	25	85	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ +kcprC+s ntkfCyynnyslsqPryfCk+CrryWt GG++rnvPvGgg+rk k+++ CCG006217.1 25 QQQPQKCPRCESLNTKFCYYNNYSLSQPRYFCKTCRRYWTLGGTMRNVPVGGGCRKGKRAK 85 68999***************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-25	25	83	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.3E-32	27	83	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.332	29	83	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	31	67	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MQGGSEDVKP NQERRLKSTQ GDDKQQQPQK CPRCESLNTK FCYYNNYSLS QPRYFCKTCR 60 RYWTLGGTMR NVPVGGGCRK GKRAKTSSSS SGEDSRLQQQ LQQQSQLLQH NLANPQNILA 120 TTNSGNSVSP ASRTKESGNL VSPPPGMSSM GSYFPGDGFL TSLEAIQSLN NNQPPIQSFS 180 FQPLNQPVNL CGDLGDTSNL GLLHGFSAVP AFGSQNQQQR QFYHVDNRGN KSVELSSYPH 240 DQESLIQSSR PAATSSHQQQ NWHRGFISNS NPTVSDTVLW SISTSTTIGH PNSNINTGTA 300 GSASLNPDQW HHDLPGNGPP S

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011027802.1	0.0	PREDICTED: dof zinc finger protein DOF5.1-like isoform X1
TrEMBL	B9H2S7	0.0	B9H2S7_POPTR; Uncharacterized protein
STRING	POPTR_0004s04590.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4145	32	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	9e-33	OBF binding protein 4