PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG006214.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Dof

Protein Properties

Length: 342aa MW: 37723.6 Da PI: 8.2707

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG006214.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.9	2.6e-39	53	112	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk++ CCG006214.1 53 QQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRV 112 7899******************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	9.3E-34	55	111	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	9.0E-28	56	111	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	57	111	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	59	95	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MLGNCEKMVV ISSTTNEWPQ NQIDEKSLTE STGKLMERPS EEVLSQPQQQ QQQQQALKCP 60 RCDSSNTKFC YYNNYSLSQP RHFCKACKRY WTRGGTLRNV PVGGGCRKNK RVRRPASAVE 120 GANNSVSSAN PNPQTPIDHI SPTSNHFNPL FYGLNSSNPS EMDLPFPGRF NSRVYSAVSG 180 YHDLQPQLNA LALGFSSGIM STNDANGFNP TKQIQDVVTS NSLLSSYSNL FGSSTTSTNT 240 TTPAMASLFA SNFNQQKSTR APNQYQNLTV PFEDLQMSGN SESGVGMKGV KIEHDQNRSN 300 WNVPSQNQID QVGFSDPSMY WNTTNSVGSW HDPANMGSSV LL

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MLGNCEKMVV ISSTTNEWPQ NQIDEKSLTE STGKLMERPS EEVLSQPQQQ QQQQQALKCP  60
RCDSSNTKFC YYNNYSLSQP RHFCKACKRY WTRGGTLRNV PVGGGCRKNK RVRRPASAVE  120
GANNSVSSAN PNPQTPIDHI SPTSNHFNPL FYGLNSSNPS EMDLPFPGRF NSRVYSAVSG  180
YHDLQPQLNA LALGFSSGIM STNDANGFNP TKQIQDVVTS NSLLSSYSNL FGSSTTSTNT  240
TTPAMASLFA SNFNQQKSTR APNQYQNLTV PFEDLQMSGN SESGVGMKGV KIEHDQNRSN  300
WNVPSQNQID QVGFSDPSMY WNTTNSVGSW HDPANMGSSV LL

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT164738	0.0	KT164738.1 Populus tomentosa clone Potom.011G26508 F-box family protein 1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011027799.1	0.0	PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBL	A0A2K2APX0	0.0	A0A2K2APX0_POPTR; Uncharacterized protein
STRING	POPTR_0011s05450.1	1e-180	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4522	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.1	5e-38	Dof family protein