PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG006175.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

WOX

Protein Properties

Length: 404aa MW: 44491 Da PI: 8.8951

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG006175.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.6	1.8e-17	72	132	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F++ +p ++e++++ +l ++ +++V++WFqNr+ + k+ CCG006175.1 72 KPRWNPKPEQIRILEAIFNSgMVNPPRDEIRKIRVQLqeygQVGDANVFYWFQNRKSRSKH 132 89***************99***********************************995 PP
2	Wus_type_Homeobox	110.1	1.2e-35	71	133	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi+iLe++++sG+++P+++ei++i+ +L+eyG+++d+NVfyWFQNrk+R++++ CCG006175.1 71 PKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRVQLQEYGQVGDANVFYWFQNRKSRSKHR 133 689**********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.95E-12	66	136	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.317	68	133	IPR001356	Homeobox domain
SMART	SM00389	4.0E-8	70	137	IPR001356	Homeobox domain
CDD	cd00086	1.05E-7	71	133	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.9E-7	71	140	IPR009057	Homeodomain-like
Pfam	PF00046	5.4E-15	72	132	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MASSNKHWPS MFKSKPCNPH DHQWQHDINP SSIMSTGCHR TPYTSGPLMD SECLKHVLQT 60 VPGCDERSPE PKPRWNPKPE QIRILEAIFN SGMVNPPRDE IRKIRVQLQE YGQVGDANVF 120 YWFQNRKSRS KHRLRNLQNS KQHSSQQQKI TSPTTKPVTA NLAAPSSSSS SSEKSSPKGS 180 KRTLSLSSPT FIDASNSPTS SVNKTYFQAH NEFVPEPFFF HSQQTGGGGT GAFAQGSCFS 240 ELSNMVHVQD HHTVGPCSRL LLSEIMNSSA SKKVNHEEKN LKMQPQLCYT PVSQVTGSIG 300 LAPPLSPSTD TSTVAFQSTI NQIQGLGQSG GTTMLTVFIN DVAFEVTMGP FNVREAFGDD 360 VLLIQSSGQP VLTNECGVTL QSLQHGAFYY LVPFGEHILK KNGK

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MASSNKHWPS MFKSKPCNPH DHQWQHDINP SSIMSTGCHR TPYTSGPLMD SECLKHVLQT  60
VPGCDERSPE PKPRWNPKPE QIRILEAIFN SGMVNPPRDE IRKIRVQLQE YGQVGDANVF  120
YWFQNRKSRS KHRLRNLQNS KQHSSQQQKI TSPTTKPVTA NLAAPSSSSS SSEKSSPKGS  180
KRTLSLSSPT FIDASNSPTS SVNKTYFQAH NEFVPEPFFF HSQQTGGGGT GAFAQGSCFS  240
ELSNMVHVQD HHTVGPCSRL LLSEIMNSSA SKKVNHEEKN LKMQPQLCYT PVSQVTGSIG  300
LAPPLSPSTD TSTVAFQSTI NQIQGLGQSG GTTMLTVFIN DVAFEVTMGP FNVREAFGDD  360
VLLIQSSGQP VLTNECGVTL QSLQHGAFYY LVPFGEHILK KNGK

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF982708	0.0	KF982708.1 Populus tomentosa WOX9a (WOX9a) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011027743.1	0.0	PREDICTED: WUSCHEL-related homeobox 9
TrEMBL	A0A1L6K4A2	0.0	A0A1L6K4A2_POPTO; WUSCHEL-related homeobox 9
STRING	POPTR_0004s05090.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3824	33	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	6e-60	homeobox-3