PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG006173.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 276aa    MW: 30885.3 Da    PI: 5.115
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG006173.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-19119169255
          AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrd      k +r++lg+f taeeAa a+++a+++++g
  CCG006173.1 119 HYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTFETAEEAALAYDKAALRIRG 169
                  7********.**********3...2234*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.2E-31118178IPR001471AP2/ERF domain
CDDcd000185.51E-29119177No hitNo description
SuperFamilySSF541713.6E-23119179IPR016177DNA-binding domain
SMARTSM003808.6E-37119183IPR001471AP2/ERF domain
PfamPF008471.4E-14119169IPR001471AP2/ERF domain
PROSITE profilePS5103223.815119177IPR001471AP2/ERF domain
PRINTSPR003673.4E-11120131IPR001471AP2/ERF domain
PRINTSPR003673.4E-11143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MTIQSDHRAA SEGMLENVWA SYIGEDRGDR GISNSEQEVS KSWQELPSLD RRDESMEVLQ  60
RLPSLGRWIS IGAETWEELL DGIIPQMNST CNDTAENRSP SSLSSIASTV KVEKVTTRHY  120
RGVRRRPWGK YAAEIRDSSR KGARVWLGTF ETAEEAALAY DKAALRIRGP KTYLNFPLET  180
VAKAMCIDCS RNDSSVLSTT NSQGNNNSCT FPGSSDNVSV IHRKRASRDW EVKSESTMME  240
QPGPKRTARA EELFANDVVE FQDLGSDYLD SLLSSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-28118178161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011016705.10.0PREDICTED: ethylene-responsive transcription factor ERF091-like
TrEMBLB9H2N00.0B9H2N0_POPTR; Uncharacterized protein
STRINGPOPTR_0004s05110.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95473142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.13e-38ERF family protein