PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG006060.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARR-B
Protein Properties Length: 672aa    MW: 73954.5 Da    PI: 9.8364
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG006060.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.31.9e-24181233255
      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  p++ Wt+ LH+rF++a++++ G +kA+Pk+ile+m+v+gL++e+v+SHLQkYR+
  CCG006060.1 181 PKVLWTSSLHSRFLQAINHI-GLDKAVPKRILEFMSVPGLSRENVASHLQKYRI 233
                  899*****************.********************************6 PP
2Response_reg57.11e-191510123109
                   CEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
  Response_reg  23 yeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                   +  v +++++ +al +l+ k+  +Dl+++D+ mp+m+G+el  +  ee  klp+i++++ ++e+ +l+al+ Ga  +++Kp+++++l +
   CCG006060.1  15 L-TVVSVKNPFDALSTLRLKKgvFDLVVTDLHMPEMNGMELQHQVDEEF-KLPVIIMSSDDSEKVILRALEGGAAFYIVKPINKDDLKN 101
                   5.68899*********9777777**********************9999.9***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004486.5E-101103IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011030.2121107IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.37E-1911106No hitNo description
Gene3DG3DSA:3.40.50.23001.4E-2512114No hitNo description
SuperFamilySSF521722.56E-2213111IPR011006CheY-like superfamily
PfamPF000722.3E-1615101IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23001.4E-25161181No hitNo description
SuperFamilySSF466898.78E-18177237IPR009057Homeodomain-like
PROSITE profilePS512949.949177236IPR017930Myb domain
TIGRFAMsTIGR015576.9E-24181233IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.2E-24182237IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MLKTCSYKEN RKLELTVVSV KNPFDALSTL RLKKGVFDLV VTDLHMPEMN GMELQHQVDE  60
EFKLPVIIMS SDDSEKVILR ALEGGAAFYI VKPINKDDLK NVWQYAVATK RGKCSLSIKE  120
IGGSQESSSS TLFDQKISVD EVNSAKSTNN KICNEKDRKN KNRKRTKEDQ EVDSQLAPKR  180
PKVLWTSSLH SRFLQAINHI GLDKAVPKRI LEFMSVPGLS RENVASHLQK YRIFLKKVAE  240
RGTSSSKNLS GRVLKSNFAS SQPSLMLKNF QQEYSQFSRQ RQVLRASVQA GFGGNTIPTP  300
DGGSNFGSLH SPKKQAPNNS ALQSPYKQSR SCGNPTGFQQ LTFGNANQAN KKRSGLESNN  360
NTGTIPPSRE SVPIGLTRGK SPTQRYQPQN QGRSNLQSFD SSEHNKFGSI GVQATNYRSR  420
VGNVGNNNNS SNTNSNYAGI RVNTDGQLIG AGQMQVSKDE LSNGFGNCGL MNWTHNGNMN  480
AASSSYLAQR GSFPASIESA NQFSPTLFTS AYQGNAPMLP PRPRPPPQQL GLGNGGQNDF  540
AFGLMNNSPP IFGGNYNQQQ QYGQGELNFS DMLLEPTSNF TAYQPQGVDQ VSTPLHDLLH  600
PDFLNSLHID DNTPWNEQPS SQVQSGEEAM NPFFGGNTSS MDGYFPNFNQ ASVRHTDIPA  660
LILSIVFTIS NN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-22177239264ARR10-B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011041635.10.0PREDICTED: two-component response regulator ARR1
TrEMBLB9ID110.0B9ID11_POPTR; Uncharacterized protein
STRINGPOPTR_0015s13860.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101422534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.18e-53response regulator 21