PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG006058.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 250aa MW: 26726.9 Da PI: 6.6907 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.6 | 4.7e-16 | 84 | 132 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +kGVr + +g+Wv+eIr+p++ ++r++lg++ t+e+Aa a++ a+++l+g CCG006058.1 84 SFKGVRLR--SGKWVSEIREPRK---TTRVWLGTYPTPEMAATAYDVAALALKG 132 69***986..5*********843...5************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.8E-10 | 83 | 132 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.59E-27 | 83 | 142 | No hit | No description |
PROSITE profile | PS51032 | 19.388 | 84 | 140 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-27 | 84 | 146 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-25 | 84 | 142 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-17 | 85 | 142 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MANPKPQADQ LPPLHSPILI PSPNRSSGQP FSSRHDEHSP RLIRLPIGIS SQPMSGRHGD 60 QSPRRPIRSL GGSSAQPASG RHPSFKGVRL RSGKWVSEIR EPRKTTRVWL GTYPTPEMAA 120 TAYDVAALAL KGTNTPLNFP ESILSYPIPA SASPSDIRAA AASAASARSP KLESGPNPEM 180 GQPETESSSS IITTDVQSGQ EIFDEEEFLN MPNLLVDMAG GMLVSPPRIN TLSSDDSPGS 240 SDAESLWSYP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF155936 | 0.0 | EF155936.1 Populus trichocarpa TINY-like protein (TINYL17) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011041634.1 | 1e-179 | PREDICTED: ethylene-responsive transcription factor ERF027-like | ||||
Swissprot | Q9FJ90 | 4e-46 | ERF25_ARATH; Ethylene-responsive transcription factor ERF025 | ||||
TrEMBL | B9ID12 | 1e-147 | B9ID12_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s13840.1 | 1e-148 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF562 | 32 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 1e-35 | ERF family protein |
Publications ? help Back to Top | |||
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