PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG006011.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HB-other
Protein Properties Length: 1647aa    MW: 179203 Da    PI: 7.2631
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG006011.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox19.81.3e-0665121157
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                  +r+R  ++++ ++ ++e+F  +  +s++e +e++++ g t +qV+ +F  +R++ +k
  CCG006011.1  65 KRPRDLINPKAVKYMQEVFSIKDAISKKESREISAQFGATVTQVRDFFASQRMRVRK 121
                  799***************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.92862122IPR001356Homeobox domain
SMARTSM003891.3E-464126IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.3E-665127IPR009057Homeodomain-like
SuperFamilySSF466892.14E-665125IPR009057Homeodomain-like
CDDcd000862.71E-565121No hitNo description
Gene3DG3DSA:1.20.930.101.9E-4323415IPR017923Transcription factor IIS, N-terminal
SuperFamilySSF476767.59E-6323415IPR017923Transcription factor IIS, N-terminal
TIGRFAMsTIGR012971.2E-8212251530IPR002524Cation efflux protein
SuperFamilySSF1611113.01E-4612271321No hitNo description
Gene3DG3DSA:1.20.1510.101.4E-4512271448IPR027469Cation efflux protein transmembrane domain
PfamPF015453.9E-4412291449IPR002524Cation efflux protein
SuperFamilySSF1611113.01E-4613501450No hitNo description
Gene3DG3DSA:3.30.70.13503.5E-2614501531IPR027470Cation efflux protein, cytoplasmic domain
SuperFamilySSF1602402.49E-2014531531No hitNo description
PfamPF169163.1E-2414541531IPR027470Cation efflux protein, cytoplasmic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0006812Biological Processcation transport
GO:0055085Biological Processtransmembrane transport
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0008324Molecular Functioncation transmembrane transporter activity
Sequence ? help Back to Top
Protein Sequence    Length: 1647 aa     Download sequence    Send to blast
MEDLTETEIG SSVESFQKFL DSQRELFHNQ IDHLQRIVVT QCKLTGVNPL SQEMAAGALS  60
IKIGKRPRDL INPKAVKYMQ EVFSIKDAIS KKESREISAQ FGATVTQVRD FFASQRMRVR  120
KLVRLSREKA IRVNAHKGPQ GPQDGVPTTS DALMPVDLVP LNSVAPNPVP MNSVSPNPAS  180
LNAVIPNPFY LNSVAPNPVP LNFASPSSAP LNFASPTSSP LNSASPNPVP LISVSPNPVP  240
LNPASLNPVP LDSAAQDPVP LNAVGPSRVD EVPSCSTQDD VLPGLDELDK HFAEKIFDLL  300
RKEETFSGQV KLMEWILQIQ TPAVLNWFLV KGGVMILATW LSQAAAEEQT SVLLVTLKVF  360
CHLPLHKAPP EHMSAVLHSV NGLRFYRTPD ISNRARVLLS KWSKLFAKSQ AIKKPNGIKS  420
STDAQDMILK QSIDEIMGNE SWQCDIGNPD GVLALSSESS ENIRKIESSQ ALKLLPASTD  480
DLSRKHILGT SSSPRKSFDA TWASQFSYLD KLIWLPFVDI LNTRIFVVWP VSGSFGGGNG  540
GELELVTDTR ERRKVQLVEQ PGQKTAGRSL QATKAASVNQ GRPMSADDIQ KPKMRALFMQ  600
NKHGKTGSSS NGSTGVKNGG RNKPSSMTTS LCPVSKIHIR PKIEEYKKLV TPPPQVSSKV  660
EGFLDLKKEI NSKEPMGGVS SKVQIPWQTP PEIKLSVLWR VGTGENSKEV DVQKNRNRRE  720
IETIYQTVQQ IPSNPKEPWD LEMDYDDSLT PEIPIEQPPD ADVAETQVSH TEHVNTVVAS  780
APSLSQVGGG SATEPDLELL AVLLKNPELV FALTSGQAGN LSSEETVKLL DMIKTGGAVL  840
AGLNGLGGKV EEKVEVSLPS PTPSSNNPGT ASMGNRVVYS DPGVPTSVPL AEKHTSLVQH  900
QNQATSIRIP QQQASIPLLS QHVSAVMNPF SLPQTSSIVP ENRQPSIVLP ANQSYPSNSS  960
MLQTPSSEMV STMKILPVNT PPLLNLSAAM NNIKSTTSVS FTSNPQETRL VPFPPSTSTI  1020
PTQLQSQPAQ INEPPIVYST RPHTGDVGPV ADSRRVRQGL VSNSPSQVNQ TNYVSSFGGP  1080
VQPSLRSGPP WERNEYVGDA GDEGYESWSP ENRRYESQEY MPGRNYSGPR SRMNSGWDYM  1140
PNNNNNRSRQ RNSSGHGDRR HTSATSSACA SFLLQPPFNS HYQVNNNNRY NNPPPFIIHR  1200
RWHFGHSHAH HSDHHHRPSP GEQSESIFRL GLAADIGLAA GKAFTGYLSG STAIIADAAH  1260
SVSDVVLSGI ALWSFKAGMA PKDKEHPYGH GKFETLGALG ISCMLLATAG GIAWHALDLL  1320
LGLLTAVPEV ANHPLTHEHV HNHLQGGHHH GVDMDHPILA LSMTIVSISV KEGLFWITKR  1380
AGERQGSGLM KANAWHHRAD AISSVVALIG VGGAILGVKF LDPLAGLVVS SMILKAGLES  1440
GYQSVLELVD AAIPEEDLYP IKQTILQVQG VQGCHRLRGR RAGSSLYLDV HIVVDPFLSV  1500
SAAHEIGENV RQEIHNSHPG IAEVFIHIDP AYLCISPTMM DQEENLNGKG NQNKKISLDD  1560
KDIELIVSGV FSSKIPEKIE VERITRHLMQ GNILLQIEIS MRPSILIRDA MELAGEAEKE  1620
ILKASSSIIQ VGFLLRLGSP IPKFVNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3h90_A5e-261242153020279Ferrous-iron efflux pump fieF
3h90_B5e-261242153020279Ferrous-iron efflux pump fieF
3h90_C5e-261242153020279Ferrous-iron efflux pump fieF
3h90_D5e-261242153020279Ferrous-iron efflux pump fieF
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011013738.10.0PREDICTED: homeobox protein LUMINIDEPENDENS-like
TrEMBLA0A1R3H0F20.0A0A1R3H0F2_COCAP; Uncharacterized protein
STRINGPOPTR_0014s12730.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02560.25e-95HB-other family protein