PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG005964.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 293aa    MW: 33204.2 Da    PI: 7.362
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG005964.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-161764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l ++v ++G g+W++++   g+ R +k+c++rw +yl
      CCG005964.1 17 KGLWSPEEDQRLRNYVLKHGHGCWSSVPINAGLQRNGKSCRLRWINYL 64
                     678*******************************************97 PP
2Myb_DNA-binding55.81.1e-1770115148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++++E+e ++ ++++lG++ W+ Ia++++ gRt++++k++w++yl
      CCG005964.1  70 RGMFSAQEEETILALHQMLGNK-WSQIAQHLP-GRTDNEIKNHWHSYL 115
                      788*******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-221267IPR009057Homeodomain-like
PROSITE profilePS5129419.1911264IPR017930Myb domain
SuperFamilySSF466897.34E-3014111IPR009057Homeodomain-like
SMARTSM007172.2E-111666IPR001005SANT/Myb domain
PfamPF002491.0E-141764IPR001005SANT/Myb domain
CDDcd001673.20E-102064No hitNo description
PROSITE profilePS5129426.58865119IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-2668119IPR009057Homeodomain-like
SMARTSM007175.6E-1569117IPR001005SANT/Myb domain
PfamPF002494.3E-1670115IPR001005SANT/Myb domain
CDDcd001671.82E-1173115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGCKSSDKPK PKPKHRKGLW SPEEDQRLRN YVLKHGHGCW SSVPINAGLQ RNGKSCRLRW  60
INYLRPGLKR GMFSAQEEET ILALHQMLGN KWSQIAQHLP GRTDNEIKNH WHSYLKKKLL  120
KDEGMESLKR TQSDSSNSDI MELSPSPKRH KMQASSFESS MSAEKPSADI NRSVPQMFES  180
PNQPKGSSLL PKVMFAEWLS LDSFASLGEP MDSKSTFDHN TIFQDNFLHD YLLDERVFGG  240
EYHNSLSDGS SGDIFSSEFK FESQSPGNEF GFTSGEDLCS GFNLSNISDV MYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-241311923128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125130ESLKRT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ9020402e-41HQ902040.2 Populus balsamifera MYB transcription factor (MYB19) gene, partial cds.
GenBankHQ9020412e-41HQ902041.2 Populus deltoides MYB transcription factor (MYB19) gene, partial cds.
GenBankJQ9297222e-41JQ929722.1 Populus trichocarpa MYB transcription factor (MYB19) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011048708.10.0PREDICTED: transcription factor LAF1-like isoform X1
RefseqXP_011048709.10.0PREDICTED: transcription factor LAF1-like isoform X2
TrEMBLB9I4991e-165B9I499_POPTR; Uncharacterized protein
STRINGPOPTR_0015s13190.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38303161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.12e-62myb domain protein 18