PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG005953.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 748aa MW: 82381.6 Da PI: 5.444 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.1 | 1e-20 | 53 | 108 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k ++t++q++eLe++F+++++p++++r eL+++lgL+ +q+k+WFqNrR+++k CCG005953.1 53 RKKYNRHTANQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 108 79999************************************************999 PP | |||||||
2 | START | 181.2 | 5.8e-57 | 258 | 480 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 la++a++el+k a++e+p W ks e +n +e++++f++ + + +ea r+sgvv +++ +lve+l+d++ W e+++ +a+t++ +s CCG005953.1 258 LALAAMDELIKIAQVESPIWIKSLdggkEVLNHEEYMRTFPPCIGmkpsnFVIEATRESGVVLANSLDLVETLMDVN-GWVEMFPsliaRAATIDIVS 354 6899**********************9999************999999999**************************.******************** PP TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS START 87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177 sg galq + ae+q++sp vp R + f+R ++ql +g+w+++dvSvd +q++ + + v +++lpSg++i+++ ng +kvtwveh +++++ + CCG005953.1 355 SGmggtksGALQMIHAEFQVISPFVPvRQVKFLRLCKQLAEGVWAVADVSVDGNQENLNAQTPVTCRRLPSGCIIQDMNNGCCKVTWVEHSEYDESAV 452 *********************************************************999999999******************************** PP HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 178 hwllrslvksglaegaktwvatlqrqce 205 h l+r++++sg+ +ga++w a+lqr+ e CCG005953.1 453 HRLYRHILNSGMGFGAQRWIAALQRHYE 480 *************************977 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.04E-19 | 39 | 110 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-21 | 40 | 110 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.253 | 50 | 110 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-18 | 52 | 114 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.8E-18 | 53 | 108 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.61E-19 | 53 | 110 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 85 | 108 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 39.624 | 248 | 484 | IPR002913 | START domain |
SuperFamily | SSF55961 | 5.86E-32 | 249 | 480 | No hit | No description |
CDD | cd08875 | 1.66E-114 | 252 | 480 | No hit | No description |
SMART | SM00234 | 1.6E-40 | 257 | 481 | IPR002913 | START domain |
Pfam | PF01852 | 2.6E-49 | 258 | 480 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.2E-4 | 319 | 478 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 9.77E-16 | 509 | 744 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 748 aa Download sequence Send to blast |
MDSHGDMGLL GEHFDPSLVG KMREDGYESR SGSDNIEGAS GEDQDAGDYQ RPRKKYNRHT 60 ANQIQELESF FKECPHPDEK QRSELSRRLG LESKQIKFWF QNRRTQMKTQ LERHENAILR 120 QENDKLRAEN ELLKQNMSDP ICNNCGGPVV PVPVSYEQQQ LRIENARLKD ELGRVCALAN 180 KFLGRPLTSS ASPVPPFGSN TKFDLAVGRN GYGNLGHTDN TLPMGLDNNG GVMMPLIKPI 240 GNAVGNEVPF DRSMFVDLAL AAMDELIKIA QVESPIWIKS LDGGKEVLNH EEYMRTFPPC 300 IGMKPSNFVI EATRESGVVL ANSLDLVETL MDVNGWVEMF PSLIARAATI DIVSSGMGGT 360 KSGALQMIHA EFQVISPFVP VRQVKFLRLC KQLAEGVWAV ADVSVDGNQE NLNAQTPVTC 420 RRLPSGCIIQ DMNNGCCKVT WVEHSEYDES AVHRLYRHIL NSGMGFGAQR WIAALQRHYE 480 CMAMLLSPTI LGEDQTVINL GGKKSMLKLA RRMVDSFCSG VCASTLHNWA NLVVESVSED 540 VRILTRKIID EPGEPDGIVL SVSTSVWLPV SQQRLFDFLR DEQSRSQWDI LSNGGILQEM 600 VQIPKGQGHW NTVSVLRSTA VDANASDNML ILQETWNDVS GSLVVYAPVD VQSVSVVMNG 660 GDSTYVALLP SGFVILPGNS FSNGEPNNCN GNPAKRDCDG NSGGGSFLTV GFQILASNLP 720 SAKLTVESVK TVQNLISCTM QRIKTAFN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011048682.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1 | ||||
Swissprot | Q0WV12 | 0.0 | ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
TrEMBL | A0A2K1XMT6 | 0.0 | A0A2K1XMT6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s13340.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1192 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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