PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG005948.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 287aa    MW: 31901.9 Da    PI: 4.7289
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG005948.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1132.1e-35361262101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+++i++d++++++isw+e+g+sf+v++++ f++++Lpk+Fkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F+kg+k+ll++i+
   CCG005948.1  36 FLTKTFKIVDDHTIDDVISWNEDGSSFIVWNPTLFSRDLLPKFFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNECFRKGEKNLLCEIQ 123
                   9*****************************************************************99.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
   CCG005948.1 124 RRK 126
                   *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.2E-3729120IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.5E-5532125IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.17E-3333125IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.3E-193659IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-3136125IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-197486IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407599IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-198799IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MASLLPLEQN SGETPTSSLA PAAAGGETSR SIPTPFLTKT FKIVDDHTID DVISWNEDGS  60
SFIVWNPTLF SRDLLPKFFK HNNFSSFVRQ LNTYGFRKVV PDRWEFSNEC FRKGEKNLLC  120
EIQRRKMVAT VAQVVAAPAA VKVIKTSPNS SSDEQVVIST RSSSPGLSLE LLDENERLRK  180
ENVRLKGELT EMKSLCGNIF SLVSDFENLR EEEEEVRKVL DLLPMKEEGG DGARIFGVEV  240
GVKRGRELSG DMEEEEEDGM QLQLRQPGGG SSDGVKIEVN GSRNGDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-242112515129Heat shock factor protein 1
5d5v_B5e-242112515129Heat shock factor protein 1
5d5v_D5e-242112515129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0140060.0KP014006.1 Populus simonii heat shock transcription factor B2a2 (HsfB2a2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011048671.10.0PREDICTED: heat stress transcription factor B-2a-like
SwissprotQ9SCW41e-79HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A0N7DK221e-175A0A0N7DK22_9ROSI; Heat shock transcription factor B2a2
STRINGPOPTR_0015s13390.11e-175(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-76heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]