PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG005924.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 146aa MW: 16149.6 Da PI: 10.925 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.3 | 4.8e-12 | 65 | 117 | 37 | 88 |
EEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 37 tledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 + d sgr+W++k+++ rk++ + v++kGW Fv ++ Lk+gD v F+ ++++ CCG005924.1 65 QAVDGSGRVWTFKCSIrRKGRPKPVISKGWLTFVASKSLKTGDKVQFSKEKNE 117 567899********884555555************************955543 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 1.69E-11 | 48 | 117 | No hit | No description |
SuperFamily | SSF101936 | 2.94E-10 | 56 | 116 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.0E-12 | 57 | 117 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.9E-9 | 65 | 117 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.825 | 68 | 131 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MAPGHTVHKT SVLSKRSFGH LVFDKWRDSQ RSSGGLILKR DSQCRPGFSA LFPPFNGGGY 60 AVDFQAVDGS GRVWTFKCSI RRKGRPKPVI SKGWLTFVAS KSLKTGDKVQ FSKEKNEAGA 120 KTHAYEIRAE KEIKIFGAVF GYAPII |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC213428 | 1e-157 | AC213428.1 Populus trichocarpa clone POP094-E14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011006364.1 | 3e-54 | PREDICTED: putative AP2/ERF and B3 domain-containing protein Os01g0140700 | ||||
TrEMBL | U7E1T2 | 9e-55 | U7E1T2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s01750.1 | 1e-55 | (Populus trichocarpa) | ||||
STRING | POPTR_0248s00220.1 | 1e-55 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2060 | 7 | 78 |