PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG005920.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 112aa    MW: 12373.3 Da    PI: 10.25
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG005920.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.15.7e-1229843589
                 EEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
           B3 35 tltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89
                 +    d sgr+W +++++rkk+    v++kGW  Fv++n Lk+gD v F  ++++ 
  CCG005920.1 29 DFEAVDGSGRVWAFRCSIRKKGHPkPVISKGWLAFVHSNSLKVGDKVQFLWEKNEA 84
                 45567999********886665546************************9776633 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.629197IPR003340B3 DNA binding domain
CDDcd100171.70E-15483No hitNo description
Gene3DG3DSA:2.40.330.104.9E-13784IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-122283IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-93084IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
KTDIKKRLSE PTGFLCSLPP FNGGGHAVDF EAVDGSGRVW AFRCSIRKKG HPKPVISKGW  60
LAFVHSNSLK VGDKVQFLWE KNEAGAKTHA YEIRAEKETK IFGAVFGYAP II
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2134281e-152AC213428.1 Populus trichocarpa clone POP094-E14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011006364.18e-67PREDICTED: putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLU7E1T23e-66U7E1T2_POPTR; Uncharacterized protein
STRINGPOPTR_0015s01750.18e-71(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778