PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG005919.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Protein Properties

Length: 121aa MW: 13356.5 Da PI: 10.9981

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG005919.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	42.3	1.4e-13	6	91	3	87
EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 kvl + d ++rl++p+ f+++ gg ++ + d sgr+W++++++ rk+ + v++kGW Fv ++ Lk+gD v ++ +++ CCG005919.1 6 KVLRRTDI--EKRLSVPNGFLSSLppfnGGG--HAVDFQAVDGSGRVWNFRCSIrRKGHPKPVISKGWVAFVASKSLKVGDKVQLSKEKN 91 55533333..357*******999997444..46789999*********884444445******************999985444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	8.586	2	106	IPR003340	B3 DNA binding domain
CDD	cd10017	2.22E-18	3	92	No hit	No description
SuperFamily	SSF101936	5.89E-14	4	91	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	2.5E-4	4	114	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.2E-16	4	92	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	7.0E-11	6	91	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
MARFSKVLRR TDIEKRLSVP NGFLSSLPPF NGGGHAVDFQ AVDGSGRVWN FRCSIRRKGH 60 PKPVISKGWV AFVASKSLKV GDKVQLSKEK NEAGAKTHAY EIRAEKEIKI FGAVFGYAPI 120 I

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC213428	1e-147	AC213428.1 Populus trichocarpa clone POP094-E14, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011006364.1	1e-73	PREDICTED: putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBL	U7E1T2	1e-74	U7E1T2_POPTR; Uncharacterized protein
STRING	POPTR_0015s01750.1	1e-75	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2060	7	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01500.1	3e-08	B3 family protein