PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG005730.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 476aa    MW: 50659.5 Da    PI: 8.4484
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG005730.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.63.3e-115174427
                 ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                   C++++rtG+C yG+rC+++H++
  CCG005730.1 51 QDCMYYLRTGFCGYGARCRYNHPR 74
                 68********************96 PP
2zf-CCCH42.11.4e-1396120327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++lC++++rtGtCk+G++Ck++H++
  CCG005730.1  96 QPLCQYYMRTGTCKFGASCKYNHPK 120
                  79*********************96 PP
3zf-CCCH34.34e-11143166427
                  ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                  ++C ++ +tG+Ck+G++CkF+H++
  CCG005730.1 143 KECTYYIKTGQCKFGATCKFHHPQ 166
                  68********************97 PP
4zf-CCCH33.85.8e-11302328127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C+++++tG Ck+ ++C+++H+p
  CCG005730.1 302 PGQPECQYYMKTGDCKFESSCRYHHPP 328
                  5789*********************97 PP
5zf-CCCH27.74.7e-09351374427
                  ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                  + C ++ + G+Ck+G+ CkF H++
  CCG005730.1 351 PTCTHYTQHGQCKFGPACKFDHPM 374
                  78********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.4934775IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-64774IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-64976IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-95074IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-55374IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-793120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.03293121IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-1196120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-696120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-698119IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-4139166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.812139167IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6142167IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-8143166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4145165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.253301329IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5301328IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-8303328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-5305328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-4307328IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-5347374IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.324347375IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-6351374IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5351377IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-4353372IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MDRYGRAQEG SQSDPALEWT GSGQETGLEE GVWQLGLGET ESEYPERPNE QDCMYYLRTG  60
FCGYGARCRY NHPRDRTAAL EAGRTGGGEF PERVGQPLCQ YYMRTGTCKF GASCKYNHPK  120
QGGSSVRPVS LNFYGYPLRP GDKECTYYIK TGQCKFGATC KFHHPQPANM QIPAQSLAPQ  180
VASVPAPTLY PTMQSPSVPS SQQYGVMVAR PPLLPGSYVQ GPYGPMLLSP GLVPYPSWSP  240
YPAPVSPIAS PNAQPAVCSG SVYGISPLSP SAPAYTGAYQ SVTSAKGPSS SSQKEHVFPE  300
RPGQPECQYY MKTGDCKFES SCRYHHPPEL VASKTNVVLS PMGFPLRPGA PTCTHYTQHG  360
QCKFGPACKF DHPMGTLSYS PSASSLADMP VAPYPVGSSI GTLAPSSSSS DLRSKPSKDS  420
SSTRLFSSTS TPSGSVGSKY SKSGAASHLS VQQSGPSTST STSTSSSTNT GARTSC
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826693e-84AC182669.2 Populus trichocarpa clone Pop1-21I14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011013662.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like
SwissprotQ6NPN31e-165C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLB9HSD60.0B9HSD6_POPTR; Uncharacterized protein
STRINGcassava4.1_006608m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-162C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]