PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG005551.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 410aa    MW: 45780.8 Da    PI: 5.8678
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG005551.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix65.41.3e-20249335186
     trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  rW++ ev+aLi +r+  e++lr  g++  + W+++s+ m   g++r++k+Ckekwen+nk +k    ++ k+  ++s+  pyf +l+
  CCG005551.1 249 RWPEAEVQALIMLRTAWEQQLRVaGSKGTNIWDAISAGMYNMGYNRTAKKCKEKWENINKHFKMSLGTAPKKPFQNSTVSPYFPELD 335
                  8*********************626677889***********************************99999988888899***9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.097242307IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.1E-4246307IPR009057Homeodomain-like
SuperFamilySSF466894.15E-5247308IPR009057Homeodomain-like
CDDcd122039.20E-21248313No hitNo description
PfamPF138371.4E-17248336No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MDLLITGDRQ IQNPNDFPLQ ITPFPPTGNF TIPTSAAAPS AAEAGSSEVA SLPPQKLRPI  60
RRTDRVPSSA REDRGESLRG LVSGQPSEVA ADGGGGSGGG LFEDEFSLSS SDGNDDDLSV  120
GMGESVGRKR KRKSKIEKFL ESLVIKVMEK QEEMHKQLVE MIESRERERL IREEAWKQQE  180
MERMKRDSEA RAQETSRNLA LISFIQNMMP GHVIEVPQPS MTISHMVNDG GNADAPIQND  240
FMGDQSNRRW PEAEVQALIM LRTAWEQQLR VAGSKGTNIW DAISAGMYNM GYNRTAKKCK  300
EKWENINKHF KMSLGTAPKK PFQNSTVSPY FPELDMLYND DFVNLGNGSA NTDNQANCAL  360
PIQTIKLTYS IWPWVKVENL KLFQVFGCLP ASSKEQPGTR NLYFSNLTLM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127132RKRKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2101290.0AC210129.1 Populus trichocarpa clone POP009-F11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011040162.10.0PREDICTED: trihelix transcription factor GT-2-like
TrEMBLB9IH130.0B9IH13_POPTR; Uncharacterized protein
STRINGPOPTR_0016s00760.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111123338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.16e-40Trihelix family protein