PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG005497.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 429aa    MW: 48260.2 Da    PI: 5.4187
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG005497.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2974.6e-91264262373
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.....fsevsPilkfs 94 
                  ++lL++c++a++s+d++l q++L+ l+++a pdgd++qRl+  f++AL ar a+  s+++k l++ e+++ n +  ++ +++     f++++P+++f+
  CCG005497.1  26 EQLLVHCVNAIESNDATLSQQILWVLNNIAPPDGDSNQRLTCAFLRALIARAAK--SGTCKLLAAMENAHCNLAIDIHKFSIielasFVDLTPWHRFG 121
                  79****************************************************..8899999888888888554444444444577*********** PP

         GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl.......v 182
                  + +aN aIleaveg   +Hi+D+++++++Q p+L++a+a+R e pp +++T+ g+ e +      ++ee+g++L +fA++ ++ +ef+v+        
  CCG005497.1 122 YTAANAAILEAVEGYLVIHIVDLSLTHCMQIPTLIDAIANRFEVPPLIKLTVAGATEDVpplLDLSYEELGSKLVNFARSRNIILEFRVIpssyadgF 219
                  *******************************************************88879988999************************88855544 PP

         GRAS 183 akrledleleeLrvkp.gEalaVnlvlqlhrll.................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                  ++ +e+l++++L   + gEal++n++++lh+++                 + s s+ s r+ +Lk ++sl P++vv+v+++ad++s++++ r+ +a++
  CCG005497.1 220 SSFIEQLRVQHLVYAEsGEALVINCHMMLHYIPeetlsgmpgtnsntyayEFSSSSMSFRTMFLKSLRSLDPTLVVLVDEDADLTSNNLVCRLRSAFN 317
                  45555556666655559*******************************9855556666799************************************* PP

         GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360
                  y +  +d++++ lpr s++r+++E+  + ++i+nv+a+eg +r+er e + +W +r+++a F+ ++++e+a +++k++l +++  g+ +++e++ +vl
  CCG005497.1 318 YLWIPYDTVDTFLPRGSRQRQWYEAD-ICWKIENVIAHEGPQRVERLEPKCRWIQRMRNANFRGISFTEDAISEVKTMLDEHA-AGWGLKKEDDDIVL 413
                  **************************.********************************************************.999*********** PP

         GRAS 361 gWkdrpLvsvSaW 373
                  +Wk++++v++SaW
  CCG005497.1 414 TWKGHNVVFASAW 426
                  ************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.7561408IPR005202Transcription factor GRAS
PfamPF035141.6E-8826426IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MNRNRPWPGF PTSKSLGSFG DANCMEQLLV HCVNAIESND ATLSQQILWV LNNIAPPDGD  60
SNQRLTCAFL RALIARAAKS GTCKLLAAME NAHCNLAIDI HKFSIIELAS FVDLTPWHRF  120
GYTAANAAIL EAVEGYLVIH IVDLSLTHCM QIPTLIDAIA NRFEVPPLIK LTVAGATEDV  180
PPLLDLSYEE LGSKLVNFAR SRNIILEFRV IPSSYADGFS SFIEQLRVQH LVYAESGEAL  240
VINCHMMLHY IPEETLSGMP GTNSNTYAYE FSSSSMSFRT MFLKSLRSLD PTLVVLVDED  300
ADLTSNNLVC RLRSAFNYLW IPYDTVDTFL PRGSRQRQWY EADICWKIEN VIAHEGPQRV  360
ERLEPKCRWI QRMRNANFRG ISFTEDAISE VKTMLDEHAA GWGLKKEDDD IVLTWKGHNV  420
VFASAWLPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B3e-461242874474Protein SHORT-ROOT
5b3h_B1e-461242820420Protein SHORT-ROOT
5b3h_E1e-461242820420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011013594.10.0PREDICTED: scarecrow-like protein 32 isoform X1
SwissprotQ9SN220.0SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A2K1ZPQ70.0A0A2K1ZPQ7_POPTR; Uncharacterized protein
STRINGPOPTR_0007s10030.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77023347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.10.0GRAS family protein