PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG005497.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GRAS | ||||||||
Protein Properties | Length: 429aa MW: 48260.2 Da PI: 5.4187 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 297 | 4.6e-91 | 26 | 426 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.....fsevsPilkfs 94 ++lL++c++a++s+d++l q++L+ l+++a pdgd++qRl+ f++AL ar a+ s+++k l++ e+++ n + ++ +++ f++++P+++f+ CCG005497.1 26 EQLLVHCVNAIESNDATLSQQILWVLNNIAPPDGDSNQRLTCAFLRALIARAAK--SGTCKLLAAMENAHCNLAIDIHKFSIielasFVDLTPWHRFG 121 79****************************************************..8899999888888888554444444444577*********** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl.......v 182 + +aN aIleaveg +Hi+D+++++++Q p+L++a+a+R e pp +++T+ g+ e + ++ee+g++L +fA++ ++ +ef+v+ CCG005497.1 122 YTAANAAILEAVEGYLVIHIVDLSLTHCMQIPTLIDAIANRFEVPPLIKLTVAGATEDVpplLDLSYEELGSKLVNFARSRNIILEFRVIpssyadgF 219 *******************************************************88879988999************************88855544 PP GRAS 183 akrledleleeLrvkp.gEalaVnlvlqlhrll.................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262 ++ +e+l++++L + gEal++n++++lh+++ + s s+ s r+ +Lk ++sl P++vv+v+++ad++s++++ r+ +a++ CCG005497.1 220 SSFIEQLRVQHLVYAEsGEALVINCHMMLHYIPeetlsgmpgtnsntyayEFSSSSMSFRTMFLKSLRSLDPTLVVLVDEDADLTSNNLVCRLRSAFN 317 45555556666655559*******************************9855556666799************************************* PP GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360 y + +d++++ lpr s++r+++E+ + ++i+nv+a+eg +r+er e + +W +r+++a F+ ++++e+a +++k++l +++ g+ +++e++ +vl CCG005497.1 318 YLWIPYDTVDTFLPRGSRQRQWYEAD-ICWKIENVIAHEGPQRVERLEPKCRWIQRMRNANFRGISFTEDAISEVKTMLDEHA-AGWGLKKEDDDIVL 413 **************************.********************************************************.999*********** PP GRAS 361 gWkdrpLvsvSaW 373 +Wk++++v++SaW CCG005497.1 414 TWKGHNVVFASAW 426 ************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 42.756 | 1 | 408 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.6E-88 | 26 | 426 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
MNRNRPWPGF PTSKSLGSFG DANCMEQLLV HCVNAIESND ATLSQQILWV LNNIAPPDGD 60 SNQRLTCAFL RALIARAAKS GTCKLLAAME NAHCNLAIDI HKFSIIELAS FVDLTPWHRF 120 GYTAANAAIL EAVEGYLVIH IVDLSLTHCM QIPTLIDAIA NRFEVPPLIK LTVAGATEDV 180 PPLLDLSYEE LGSKLVNFAR SRNIILEFRV IPSSYADGFS SFIEQLRVQH LVYAESGEAL 240 VINCHMMLHY IPEETLSGMP GTNSNTYAYE FSSSSMSFRT MFLKSLRSLD PTLVVLVDED 300 ADLTSNNLVC RLRSAFNYLW IPYDTVDTFL PRGSRQRQWY EADICWKIEN VIAHEGPQRV 360 ERLEPKCRWI QRMRNANFRG ISFTEDAISE VKTMLDEHAA GWGLKKEDDD IVLTWKGHNV 420 VFASAWLPA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 3e-46 | 12 | 428 | 74 | 474 | Protein SHORT-ROOT |
5b3h_B | 1e-46 | 12 | 428 | 20 | 420 | Protein SHORT-ROOT |
5b3h_E | 1e-46 | 12 | 428 | 20 | 420 | Protein SHORT-ROOT |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011013594.1 | 0.0 | PREDICTED: scarecrow-like protein 32 isoform X1 | ||||
Swissprot | Q9SN22 | 0.0 | SCL32_ARATH; Scarecrow-like protein 32 | ||||
TrEMBL | A0A2K1ZPQ7 | 0.0 | A0A2K1ZPQ7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s10030.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7702 | 33 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49950.1 | 0.0 | GRAS family protein |