PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG005478.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ARR-B | ||||||||
Protein Properties | Length: 516aa MW: 58131 Da PI: 8.4605 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 70.1 | 3.5e-22 | 198 | 252 | 1 | 54 |
G2-like 1 kprlrWtpeLHerFveaveqLGGs.ekAtPktilelmkvkgLtlehvkSHLQkYR 54 kpr+ W++eLH +Fv++ve+L e+ Pk+i+e+m+v+gL++e+++SHLQkYR CCG005478.1 198 KPRVTWSSELHVKFVDCVEKLDARgERVQPKRIREMMNVEGLSRENIASHLQKYR 252 79*******************76537899************************** PP | |||||||
2 | Response_reg | 59.3 | 2.1e-20 | 29 | 137 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl +d + + ++ l +l+k +y +v++++ + eal++l+e++ ++++++D++ +mdG++ll+ i e +lp+i+v+a+++++ + + ++ Ga+ CCG005478.1 29 VLAIDANVVCLKYLVAILRKCQY-RVTSTTLAAEALKILRENKndYHVVITDVKRLDMDGFKLLEIIGLEM-DLPVILVSAEDSQSSIMKGIRHGAR 123 6788999999*************.***************877778********************996644.8************************ PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ ++e+ + CCG005478.1 124 DYLLKPVRIQEMQN 137 ********999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 5.83E-26 | 26 | 149 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 2.3E-19 | 27 | 139 | IPR001789 | Signal transduction response regulator, receiver domain |
Gene3D | G3DSA:3.40.50.2300 | 1.9E-32 | 27 | 171 | No hit | No description |
PROSITE profile | PS50110 | 32.215 | 28 | 143 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.3E-16 | 29 | 137 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 2.04E-17 | 30 | 142 | No hit | No description |
SuperFamily | SSF46689 | 2.15E-14 | 196 | 257 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.3E-22 | 197 | 257 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.5E-20 | 198 | 253 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.7E-7 | 200 | 252 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 516 aa Download sequence Send to blast |
MAKNNDEVSE ISMHDKGRGD MFNPADLRVL AIDANVVCLK YLVAILRKCQ YRVTSTTLAA 60 EALKILRENK NDYHVVITDV KRLDMDGFKL LEIIGLEMDL PVILVSAEDS QSSIMKGIRH 120 GARDYLLKPV RIQEMQNIWQ HVVRKRLSDS SDKSSSFTKE TIEQESVPTE TKAEAELTGV 180 KKKEIIGNPN GDACSGKKPR VTWSSELHVK FVDCVEKLDA RGERVQPKRI REMMNVEGLS 240 RENIASHLQK YRNLLKKHKD KMNQQDNAGT DLNRYGRVSA TKNGLWNTYG DSTQKSQSLA 300 SSFTDSKRMF FQPSKQNVFL ENSLPSNITM RKPVPVPEFK GLNFSASSST WKLPTEYTGS 360 QSFGHDPGLC NLSPLLCSPA ASFKPSFPMH GHTSIDTSPA SVLSNPSYFP GQYGEGISMN 420 LCGSGTSNFR AHDSHCAYRD QKSLLEDFMN SEEAKLFMDE EISDMVNQAI VFFRLTKWQF 480 DISPLIMVQT CSTVRQKHNT TFSPPWQFNS DATPRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-14 | 197 | 257 | 4 | 62 | ARR10-B |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011044007.1 | 0.0 | PREDICTED: two-component response regulator ARR10-like | ||||
TrEMBL | B9IM11 | 0.0 | B9IM11_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s10280.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17441 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31920.1 | 1e-69 | response regulator 10 |