PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG005478.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARR-B
Protein Properties Length: 516aa    MW: 58131 Da    PI: 8.4605
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG005478.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like70.13.5e-22198252154
      G2-like   1 kprlrWtpeLHerFveaveqLGGs.ekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                  kpr+ W++eLH +Fv++ve+L    e+  Pk+i+e+m+v+gL++e+++SHLQkYR
  CCG005478.1 198 KPRVTWSSELHVKFVDCVEKLDARgERVQPKRIREMMNVEGLSRENIASHLQKYR 252
                  79*******************76537899************************** PP

2Response_reg59.32.1e-20291371109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl +d + + ++ l  +l+k +y +v++++ + eal++l+e++  ++++++D++  +mdG++ll+ i  e  +lp+i+v+a+++++ + + ++ Ga+
   CCG005478.1  29 VLAIDANVVCLKYLVAILRKCQY-RVTSTTLAAEALKILRENKndYHVVITDVKRLDMDGFKLLEIIGLEM-DLPVILVSAEDSQSSIMKGIRHGAR 123
                   6788999999*************.***************877778********************996644.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ ++e+ +
   CCG005478.1 124 DYLLKPVRIQEMQN 137
                   ********999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521725.83E-2626149IPR011006CheY-like superfamily
SMARTSM004482.3E-1927139IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23001.9E-3227171No hitNo description
PROSITE profilePS5011032.21528143IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.3E-1629137IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.04E-1730142No hitNo description
SuperFamilySSF466892.15E-14196257IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-22197257IPR009057Homeodomain-like
TIGRFAMsTIGR015575.5E-20198253IPR006447Myb domain, plants
PfamPF002496.7E-7200252IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MAKNNDEVSE ISMHDKGRGD MFNPADLRVL AIDANVVCLK YLVAILRKCQ YRVTSTTLAA  60
EALKILRENK NDYHVVITDV KRLDMDGFKL LEIIGLEMDL PVILVSAEDS QSSIMKGIRH  120
GARDYLLKPV RIQEMQNIWQ HVVRKRLSDS SDKSSSFTKE TIEQESVPTE TKAEAELTGV  180
KKKEIIGNPN GDACSGKKPR VTWSSELHVK FVDCVEKLDA RGERVQPKRI REMMNVEGLS  240
RENIASHLQK YRNLLKKHKD KMNQQDNAGT DLNRYGRVSA TKNGLWNTYG DSTQKSQSLA  300
SSFTDSKRMF FQPSKQNVFL ENSLPSNITM RKPVPVPEFK GLNFSASSST WKLPTEYTGS  360
QSFGHDPGLC NLSPLLCSPA ASFKPSFPMH GHTSIDTSPA SVLSNPSYFP GQYGEGISMN  420
LCGSGTSNFR AHDSHCAYRD QKSLLEDFMN SEEAKLFMDE EISDMVNQAI VFFRLTKWQF  480
DISPLIMVQT CSTVRQKHNT TFSPPWQFNS DATPRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-14197257462ARR10-B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011044007.10.0PREDICTED: two-component response regulator ARR10-like
TrEMBLB9IM110.0B9IM11_POPTR; Uncharacterized protein
STRINGPOPTR_0018s10280.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1744167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.11e-69response regulator 10