PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG005292.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 558aa    MW: 63095.8 Da    PI: 10.1224
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG005292.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.31.1e-1619108299
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  fkv   +d+l++g l+lp kf++++g++   +   +     g+ We++l  ++++g+++l+kGWkeF++   +  g f+vF+++g+ +f  +v +f++
  CCG005292.1  19 FKVI-LEDSLREGKLMLPQKFVTRCGMD--LTNLAR-LKVLGEAWEIEL--KRRDGKVWLQKGWKEFAEHYSVACGHFLVFEYEGNCDF--HVLIFDN 108
                  5544.589999999***********988..433444.44579*******..**************************************..****997 PP
2B371.51.1e-22273366197
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  f+ +++ps+v++   l++p +fa+++  kk+++  +tl   +gr+W vk+ y+++++++++  GW+ F+k+n+L +gDf+vF+l++ ++ +l+v +f
  CCG005292.1 273 FKVAMSPSYVHTGYKLSVPSSFARKYFTKKQGN--VTLCVADGRTWPVKY-YNRTKSGVIFCHGWRAFAKDNNLVVGDFCVFELINVTKMSLKVEFF 366
                  667899********************8777675..7777778********.9999999**************************9888887888776 PP
3B362.18.9e-20463555198
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ffkv ++s++l+++ +++p +f+e++ + k    ++++ +   rsW vkli+r ++++ +l++GW +F+++n L++gD + F+ ++  ++ l+v++ r
  CCG005292.1 463 FFKVVLRSYYLNKSFVSVPMSFVERYLKHKS---QIVMLQVADRSWPVKLIVRWSQRQAILSAGWARFARENSLQVGDACAFEIIK--NGMLKVSISR 555
                  99************************54433...5999999***********9999999************************876..5666888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-2313109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-2114109IPR015300DNA-binding pseudobarrel domain
CDDcd100171.02E-1516107No hitNo description
PROSITE profilePS5086312.63317109IPR003340B3 DNA binding domain
SMARTSM010192.5E-1618109IPR003340B3 DNA binding domain
PfamPF023622.0E-1318108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.9E-28265366IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.86E-26266363IPR015300DNA-binding pseudobarrel domain
CDDcd100176.94E-27271366No hitNo description
SMARTSM010196.8E-18273369IPR003340B3 DNA binding domain
PfamPF023622.2E-20273366IPR003340B3 DNA binding domain
PROSITE profilePS5086314.565273369IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.2E-23459555IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-21460556IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-18463557IPR003340B3 DNA binding domain
CDDcd100176.08E-20463555No hitNo description
PROSITE profilePS5086314.889463557IPR003340B3 DNA binding domain
PfamPF023626.7E-18463555IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MGEGDGKPLM FVAKPPHFFK VILEDSLREG KLMLPQKFVT RCGMDLTNLA RLKVLGEAWE  60
IELKRRDGKV WLQKGWKEFA EHYSVACGHF LVFEYEGNCD FHVLIFDNSA TEIDYPHKNN  120
RSEVSGRGLL KECKKDRGEE NNSVEILDHF SPSRRTRKKS PLPCPRPHKM VRTYSTYETG  180
TCSKLNTSVV VPPTGTWSRG MKLESSKTKA RLCCSVRGLD EEVSIRGGRG MLMARGQKLS  240
HAGAIANMRP LTCYEKAKAL CRTTAFKSEN PFFKVAMSPS YVHTGYKLSV PSSFARKYFT  300
KKQGNVTLCV ADGRTWPVKY YNRTKSGVIF CHGWRAFAKD NNLVVGDFCV FELINVTKMS  360
LKVEFFHLKD VKSLLSLADM GGANQVKPNK SLVAKPQSEW NSRGGAGISN PDDEHKPGEF  420
EHSESRFEVE PDKFGKPELK NSSSVLVTQG SETESKFIST HPFFKVVLRS YYLNKSFVSV  480
PMSFVERYLK HKSQIVMLQV ADRSWPVKLI VRWSQRQAIL SAGWARFARE NSLQVGDACA  540
FEIIKNGMLK VSISRSGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A6e-1824155517144B3 domain-containing transcription factor VRN1
4i1k_B6e-1824155517144B3 domain-containing transcription factor VRN1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153159RRTRKKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028427.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X1
TrEMBLB9N0J60.0B9N0J6_POPTR; Uncharacterized protein
STRINGPOPTR_0004s23920.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-46B3 family protein