PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG005218.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 115aa MW: 13482.4 Da PI: 8.8861 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.9 | 6.3e-12 | 7 | 105 | 3 | 98 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS..-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg..rsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 k+l s + + rl +p + ++++ +++ +++ + +e ++ ++W+++l++r++ +r v+t+ W +Fv+++gLk+gD + +++++ +++++++ CCG005218.1 7 KKL--SQTDIEYRLAFPTSSLRAFPMPE-GETAVYFEATDTleNEWNFRLSIRGGNDRytkPVITGDWLQFVRDKGLKVGDKIFLTREEGvNGERYRI 101 555..44444567999999999997664.55688888777777*******9977777766689***********************987768888887 PP EEE- CS B3 95 kvfr 98 k+ r CCG005218.1 102 KAER 105 7655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.6E-13 | 4 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0071 | 5 | 104 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.23E-12 | 6 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.32E-15 | 7 | 93 | No hit | No description |
Pfam | PF02362 | 1.6E-8 | 16 | 105 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MEVLMEKKLS QTDIEYRLAF PTSSLRAFPM PEGETAVYFE ATDTLENEWN FRLSIRGGND 60 RYTKPVITGD WLQFVRDKGL KVGDKIFLTR EEGVNGERYR IKAERKIFKV WANVQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011028527.1 | 7e-34 | PREDICTED: B3 domain-containing protein Os02g0764100-like | ||||
TrEMBL | A0A3N7G753 | 6e-74 | A0A3N7G753_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s23040.1 | 4e-34 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11016 | 3 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25560.1 | 2e-07 | RAV family protein |